Click here to switch to the map view.

The map label for this gene is dacB [H]

Identifier: 226949097

GI number: 226949097

Start: 2082556

End: 2083692

Strand: Reverse

Name: dacB [H]

Synonym: CLM_2013

Alternate gene names: 226949097

Gene position: 2083692-2082556 (Counterclockwise)

Preceding gene: 226949100

Following gene: 226949095

Centisome position: 50.15

GC content: 28.5

Gene sequence:

>1137_bases
ATGAAAAAAACTCTAAAAAACAAATTTATATTAATAATTTCTTTAATATTTATAGTTACATTAATACCAACAAAAGTCTA
CGGGAAAGAAGAATCTCAAAAAAACAAACCACCTTATATTAATGCTAGATGCGCTATTGCTATAGATAAGGATACAGGAA
TAGTATTATTTGAAAAATCAGCCAACGAAATAGTTCCTATTGCAAGTACCACAAAAATAATGACCACTCTAGTAGCACTA
AAGTATGGAGACTTGGATAGAAAAATAGAAATCTCTGAAAATGCAGATAAAATAAGAGGATCTGTGGTAGGGTATAGAAA
AGGTGAAAAAATAACCTTAAGAGAATTACTTTATGGCCTTATGTTAAGATCCGGCAATGATGCAGCTATAGCTATAGCTG
AGGGTATAGCAGGAAGTATAGAAGGTTTTTCTAAACTTATGAATGAGTATGCTAGTGAAATAGGACTTTTAAATTCTCAC
TTTATAACTCCCCATGGTTTAGATAAAGATGAACATTACTCTACAGCCTATGATTTAGCTCTAGCTACAGCAACTGCTAA
AAAATATGAATTGTTTAATAAAATAGTATCCTCCAAAGATGTAAAAAAAGAAGAATATAATTTTACAAGAGATTATCAAA
ATATAAATAAAATACTTTGGAAAATACCAGAAGCGGATGGAGTTAAAACAGGATATACTGGGAAAGCAGGTAAATGTTTA
GTAACCTCCTCTAAAATTAATGGTAATGATATTATAATAGTTGTTTTAAATTGCACTCCTAGGTGGAACGAAACAACAAA
GATACATAATTATGTTAAAAATAATTATGACTTCAAAAAAATATGTACTAGAGGAGATATTTTAGATCAGGCTGTTTTTG
AGGAAGGTTCCGTAAATATAATAGCAGATAAGGATATAATTATTCCTTTTAAAAATGGAGCGGATTATTCTATAAAAATA
AATAAGCCTAAAGAGTTAAACTGGAAAGTAAAAAAAGGTGAAGATTTTGGATCTCTTTCTATATTAAATGGGAATGAACT
AATTTATACTAAAAAACTTAAAGCAGGAAATAACTTATCTAAGGGTGGCATAAAAAATTGGTTTTTAAATAAGAAAAAAT
GTATCTCTGATAAATAA

Upstream 100 bases:

>100_bases
AAAAAATTATGTAAATTAAACTAAAATGTAAACTAAAAAATTATTTACTCTTAAAAAACTCTAGAAATAATAAATACAAC
ATAAATGGAGAGTGAACAAG

Downstream 100 bases:

>100_bases
GAATTAATAAGAGGGATGTCTCAAAATAGATTTAATTTTTATATTTCGAGCTTTAAAATTAAATCTATTTTAATTTTGAG
ATATCCCTTTATTGTTGTTT

Product: putative serine-type D-Ala-D-Ala carboxypeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein 5*; PBP-5* [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKKTLKNKFILIISLIFIVTLIPTKVYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVAL
KYGDLDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSH
FITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCL
VTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKI
NKPKELNWKVKKGEDFGSLSILNGNELIYTKKLKAGNNLSKGGIKNWFLNKKKCISDK

Sequences:

>Translated_378_residues
MKKTLKNKFILIISLIFIVTLIPTKVYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVAL
KYGDLDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSH
FITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCL
VTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKI
NKPKELNWKVKKGEDFGSLSILNGNELIYTKKLKAGNNLSKGGIKNWFLNKKKCISDK
>Mature_378_residues
MKKTLKNKFILIISLIFIVTLIPTKVYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVAL
KYGDLDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSH
FITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCL
VTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKI
NKPKELNWKVKKGEDFGSLSILNGNELIYTKKLKAGNNLSKGGIKNWFLNKKKCISDK

Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Required specifically for the synthesis of the spore form of peptidoglycan (cortex) [H]

COG id: COG1686

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Forespore outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S11 family [H]

Homologues:

Organism=Escherichia coli, GI1787062, Length=374, Percent_Identity=32.8877005347594, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87082022, Length=266, Percent_Identity=31.9548872180451, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786851, Length=221, Percent_Identity=37.5565610859729, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082054, Length=254, Percent_Identity=27.5590551181102, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR015956
- InterPro:   IPR018044
- InterPro:   IPR012907
- InterPro:   IPR001967 [H]

Pfam domain/function: PF07943 PBP5_C; PF00768 Peptidase_S11 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 42297; Mature: 42297

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLKNKFILIISLIFIVTLIPTKVYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKS
CCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCEECEEEEEEEECCCCEEEEECC
ANEIVPIASTTKIMTTLVALKYGDLDRKIEISENADKIRGSVVGYRKGEKITLRELLYGL
CCCEEECCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCEEEECCCCEEEHHHHHHHH
MLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA
HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
LATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCL
HHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEE
VTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNI
EEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCEEE
IADKDIIIPFKNGADYSIKINKPKELNWKVKKGEDFGSLSILNGNELIYTKKLKAGNNLS
EECCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCEEEECCCEEEEEEEECCCCCCC
KGGIKNWFLNKKKCISDK
CCCCCHHHCCCCHHCCCC
>Mature Secondary Structure
MKKTLKNKFILIISLIFIVTLIPTKVYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKS
CCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCEECEEEEEEEECCCCEEEEECC
ANEIVPIASTTKIMTTLVALKYGDLDRKIEISENADKIRGSVVGYRKGEKITLRELLYGL
CCCEEECCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCEEEECCCCEEEHHHHHHHH
MLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA
HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
LATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCL
HHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEE
VTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNI
EEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCEEE
IADKDIIIPFKNGADYSIKINKPKELNWKVKKGEDFGSLSILNGNELIYTKKLKAGNNLS
EECCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCEEEECCCEEEEEEEECCCCCCC
KGGIKNWFLNKKKCISDK
CCCCCHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548223; 7934829; 9384377 [H]