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The map label for this gene is 226948974

Identifier: 226948974

GI number: 226948974

Start: 1936021

End: 1936722

Strand: Direct

Name: 226948974

Synonym: CLM_1888

Alternate gene names: NA

Gene position: 1936021-1936722 (Clockwise)

Preceding gene: 226948973

Following gene: 226948975

Centisome position: 46.59

GC content: 33.62

Gene sequence:

>702_bases
ATGCGTAAATTATCACAAGAGGAATTTAAAGAGATATTAAAGAATAGGAACCCAAAAGAAAGGCTTGTTTTAAAAGAGAT
AGAACTTTTTGATATGGATTTTACAAGTTGGAATTTATCTAATATTGATTTTTCTTTGAGTGCATTCCATCGAGTTAAGT
TTGATGAGGCAAATCTAGAGTATAGCAGTGTTTTTAATGTATTATTTGATGAATGTACTGTACGTAAGGCGAATTTTAGA
CATGCAAATTTAGAATGTGCAGTGCTTCGGTATGTAGATATGACTGGCTGTAATATTGAAGGTGCAAATTTATATGCTGC
AGTGTTAGAGTATGCTAAATTGGATGATATTATTTTCGATGAGGATACAAAATGGTTTCATTTACATTGTCCAGAGAAAG
GAGCATTTCTTGCATATAAAAAGTGTTTTAATGATCGTTTAGTACAGCTTCTAATACCGGCAGATGCAAAGCGCACTTCG
GCAACGTTACCTTCTTGTCGCTGTAATAAGGCAAAAGTTCTTACAATCAAAAGCTTCGACTATAAAGAAAGTTATATGGA
AGCTTGGTCTTTAGTAGATGAGAACTTTGTTTATCGTGTAGGTGAATGGGTAGAAGTAAAAGATTTTAATGAGGATCGAT
GGATGGACTCTACTACGGGCATTCATTTTTGGATGACAAGAGAAGAAGCAAAGAACTATTAA

Upstream 100 bases:

>100_bases
ACTATTGGATATTGGCCGATCTACATTGTACAGAAAAATAAAAAAATATAATATAAAAGAAAGATATAGAATTACGTACA
CGGAAAAGGAGTAAAATATC

Downstream 100 bases:

>100_bases
AAGCGAATATTTATTTAAAATACCGTATTATTCATAAGTGAATTTACAGTATTTTTTATGTCTCATCTAAAAGATAATGT
AAAAAACACGCAATGAAATC

Product: pentapeptide repeat family protein

Products: NA

Alternate protein names: Pentapeptide Repeat-Containing Protein; Pentapeptide Repeat Protein

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MRKLSQEEFKEILKNRNPKERLVLKEIELFDMDFTSWNLSNIDFSLSAFHRVKFDEANLEYSSVFNVLFDECTVRKANFR
HANLECAVLRYVDMTGCNIEGANLYAAVLEYAKLDDIIFDEDTKWFHLHCPEKGAFLAYKKCFNDRLVQLLIPADAKRTS
ATLPSCRCNKAKVLTIKSFDYKESYMEAWSLVDENFVYRVGEWVEVKDFNEDRWMDSTTGIHFWMTREEAKNY

Sequences:

>Translated_233_residues
MRKLSQEEFKEILKNRNPKERLVLKEIELFDMDFTSWNLSNIDFSLSAFHRVKFDEANLEYSSVFNVLFDECTVRKANFR
HANLECAVLRYVDMTGCNIEGANLYAAVLEYAKLDDIIFDEDTKWFHLHCPEKGAFLAYKKCFNDRLVQLLIPADAKRTS
ATLPSCRCNKAKVLTIKSFDYKESYMEAWSLVDENFVYRVGEWVEVKDFNEDRWMDSTTGIHFWMTREEAKNY
>Mature_233_residues
MRKLSQEEFKEILKNRNPKERLVLKEIELFDMDFTSWNLSNIDFSLSAFHRVKFDEANLEYSSVFNVLFDECTVRKANFR
HANLECAVLRYVDMTGCNIEGANLYAAVLEYAKLDDIIFDEDTKWFHLHCPEKGAFLAYKKCFNDRLVQLLIPADAKRTS
ATLPSCRCNKAKVLTIKSFDYKESYMEAWSLVDENFVYRVGEWVEVKDFNEDRWMDSTTGIHFWMTREEAKNY

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27552; Mature: 27552

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLSQEEFKEILKNRNPKERLVLKEIELFDMDFTSWNLSNIDFSLSAFHRVKFDEANLE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCEEHHHHEEEEECCCCCH
YSSVFNVLFDECTVRKANFRHANLECAVLRYVDMTGCNIEGANLYAAVLEYAKLDDIIFD
HHHHHHHHHHHHHEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEC
EDTKWFHLHCPEKGAFLAYKKCFNDRLVQLLIPADAKRTSATLPSCRCNKAKVLTIKSFD
CCCCEEEEECCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC
YKESYMEAWSLVDENFVYRVGEWVEVKDFNEDRWMDSTTGIHFWMTREEAKNY
CHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCEEEEEEHHHHCCC
>Mature Secondary Structure
MRKLSQEEFKEILKNRNPKERLVLKEIELFDMDFTSWNLSNIDFSLSAFHRVKFDEANLE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCEEHHHHEEEEECCCCCH
YSSVFNVLFDECTVRKANFRHANLECAVLRYVDMTGCNIEGANLYAAVLEYAKLDDIIFD
HHHHHHHHHHHHHEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEC
EDTKWFHLHCPEKGAFLAYKKCFNDRLVQLLIPADAKRTSATLPSCRCNKAKVLTIKSFD
CCCCEEEEECCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC
YKESYMEAWSLVDENFVYRVGEWVEVKDFNEDRWMDSTTGIHFWMTREEAKNY
CHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCEEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA