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The map label for this gene is rhaR [C]

Identifier: 226948928

GI number: 226948928

Start: 1872778

End: 1873767

Strand: Direct

Name: rhaR [C]

Synonym: CLM_1841

Alternate gene names: 226948928

Gene position: 1872778-1873767 (Clockwise)

Preceding gene: 226948927

Following gene: 226948929

Centisome position: 45.07

GC content: 25.25

Gene sequence:

>990_bases
TTGGAAAATAAAAAAACCGTTGTAGATATGTATGATAAATATGTTAAGGAGCAATTTAAGTGTAAAACTTCAGATGAGCT
TCTAGGTAAGAAGTACATTATTGGAAAGCAATTTGGAGTTGGAAATTTTTCAAGAATGAAAATAGAAGATGGTTTAGAAA
TTTCAAAGATTAACATGTATTCAACGGATATGTATTTTGACAATAGAGGCTATGGGGATCATATCTTAGAAATAGGGTAT
TGTTATAGTGGAATTACGAAAATTTTAGCTTTGCCAAGTAATAAAGAATATATTCTTAAAGAAGGGCAAGTTTTTATTTA
TAAAGCGTTGAATGATGTAGAGCATTTTAAATTTAAATATGATAAATGTAAAACTGTATCAATCCATATGCATTTTAATA
CCATTAAGAAGGCTGTAAATCCAATATGGGAAGATAAAGTTATAATGGATTGGGAAACACAAATGAATAACATATTTAAA
AAAGATATATTAATAATTGAAAAAGCTAGTTATGATATAAAAAAGATAGCAGAAGAAATAGATGATATTCAAATTGATAA
TATGATGGGATATATGAAACTTAAGCTAAAGACAATAGAATTTTTGGCTATTTTTTTTGAAAAAAATTCTAACATAAAAT
TAATACAAAGTTCAGAAGATGAGGAAAGAGAGAGTATAATTAAGGCTAAGGATATAATAAGTAAAAATCTCCGAGAGCCC
CCATCACTTAAGAAATTAGCTGGTGATTTGAATATAAGTTTATATAAATTACAAAAAGCTTTTAAAAATGTTACTGGAAA
TACAGTCTATGAATATATAAAGAAATCAAAAATTGAAAAGGCAAAATATTTATTAAAGAATACAAACATGTCAATTTTAG
AAATTGCAAATGAAATAGGCTATGAAAATCCAAGTAAGTTCTCAAATGCCTTTAAAGGCTATAATAATATGAATCCATTA
AAATATAGAAAATTAAATAAATCTGTATAA

Upstream 100 bases:

>100_bases
AAGAAAATCCCATATAATTTAGGGAGAATGAGAATTAAAATCAAAATCATTAAAAATAGATACCTCGGAATTATTTAGGG
GAAAGAGGGGGGTGGGAACT

Downstream 100 bases:

>100_bases
AGAATAATAAACTATAAAAATGTTCTAAAGTGATTTTTTGGAGCATTTTTTATTTTTTTTGGAGTGGAAAATGAAAATGA
TTTTCAATTATAATTAGTTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcription Regulator; Two Component AraC Family Transcriptional Regulator; HTH Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Regulatory Protein PchR; Response Regulator Receiver Protein; Transcriptional Regulator Arac Family; Regulatory Protein PcrR; Two-Component Response Regulator; Two Component Transcriptional Regulator; AraC Family Regulatory Protein; Response Regulator; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator YbtA; Regulatory Helix-Turn-Helix Protein AraC Family; Regulatory Protein; Two Component Transcriptional Regulator AraC Family; Methylphosphotriester-DNA Alkyltransferase; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Two Component Transcriptional Regulator Arac Family; Adenosine Deaminase

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MENKKTVVDMYDKYVKEQFKCKTSDELLGKKYIIGKQFGVGNFSRMKIEDGLEISKINMYSTDMYFDNRGYGDHILEIGY
CYSGITKILALPSNKEYILKEGQVFIYKALNDVEHFKFKYDKCKTVSIHMHFNTIKKAVNPIWEDKVIMDWETQMNNIFK
KDILIIEKASYDIKKIAEEIDDIQIDNMMGYMKLKLKTIEFLAIFFEKNSNIKLIQSSEDEERESIIKAKDIISKNLREP
PSLKKLAGDLNISLYKLQKAFKNVTGNTVYEYIKKSKIEKAKYLLKNTNMSILEIANEIGYENPSKFSNAFKGYNNMNPL
KYRKLNKSV

Sequences:

>Translated_329_residues
MENKKTVVDMYDKYVKEQFKCKTSDELLGKKYIIGKQFGVGNFSRMKIEDGLEISKINMYSTDMYFDNRGYGDHILEIGY
CYSGITKILALPSNKEYILKEGQVFIYKALNDVEHFKFKYDKCKTVSIHMHFNTIKKAVNPIWEDKVIMDWETQMNNIFK
KDILIIEKASYDIKKIAEEIDDIQIDNMMGYMKLKLKTIEFLAIFFEKNSNIKLIQSSEDEERESIIKAKDIISKNLREP
PSLKKLAGDLNISLYKLQKAFKNVTGNTVYEYIKKSKIEKAKYLLKNTNMSILEIANEIGYENPSKFSNAFKGYNNMNPL
KYRKLNKSV
>Mature_329_residues
MENKKTVVDMYDKYVKEQFKCKTSDELLGKKYIIGKQFGVGNFSRMKIEDGLEISKINMYSTDMYFDNRGYGDHILEIGY
CYSGITKILALPSNKEYILKEGQVFIYKALNDVEHFKFKYDKCKTVSIHMHFNTIKKAVNPIWEDKVIMDWETQMNNIFK
KDILIIEKASYDIKKIAEEIDDIQIDNMMGYMKLKLKTIEFLAIFFEKNSNIKLIQSSEDEERESIIKAKDIISKNLREP
PSLKKLAGDLNISLYKLQKAFKNVTGNTVYEYIKKSKIEKAKYLLKNTNMSILEIANEIGYENPSKFSNAFKGYNNMNPL
KYRKLNKSV

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081928, Length=96, Percent_Identity=35.4166666666667, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38501; Mature: 38501

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKKTVVDMYDKYVKEQFKCKTSDELLGKKYIIGKQFGVGNFSRMKIEDGLEISKINMY
CCCCHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCEEEEECCCCEEEEEEEE
STDMYFDNRGYGDHILEIGYCYSGITKILALPSNKEYILKEGQVFIYKALNDVEHFKFKY
EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEHHHHHHHHHEEC
DKCKTVSIHMHFNTIKKAVNPIWEDKVIMDWETQMNNIFKKDILIIEKASYDIKKIAEEI
CCEEEEEEEEEHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHEEEEECCCCCHHHHHHHH
DDIQIDNMMGYMKLKLKTIEFLAIFFEKNSNIKLIQSSEDEERESIIKAKDIISKNLREP
CCEEHHHHHHHHHHHHHHEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
PSLKKLAGDLNISLYKLQKAFKNVTGNTVYEYIKKSKIEKAKYLLKNTNMSILEIANEIG
CCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
YENPSKFSNAFKGYNNMNPLKYRKLNKSV
CCCHHHHHHHHCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MENKKTVVDMYDKYVKEQFKCKTSDELLGKKYIIGKQFGVGNFSRMKIEDGLEISKINMY
CCCCHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCEEEEECCCCEEEEEEEE
STDMYFDNRGYGDHILEIGYCYSGITKILALPSNKEYILKEGQVFIYKALNDVEHFKFKY
EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEHHHHHHHHHEEC
DKCKTVSIHMHFNTIKKAVNPIWEDKVIMDWETQMNNIFKKDILIIEKASYDIKKIAEEI
CCEEEEEEEEEHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHEEEEECCCCCHHHHHHHH
DDIQIDNMMGYMKLKLKTIEFLAIFFEKNSNIKLIQSSEDEERESIIKAKDIISKNLREP
CCEEHHHHHHHHHHHHHHEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
PSLKKLAGDLNISLYKLQKAFKNVTGNTVYEYIKKSKIEKAKYLLKNTNMSILEIANEIG
CCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
YENPSKFSNAFKGYNNMNPLKYRKLNKSV
CCCHHHHHHHHCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA