Click here to switch to the map view.

The map label for this gene is trg [C]

Identifier: 226948859

GI number: 226948859

Start: 1800897

End: 1802969

Strand: Direct

Name: trg [C]

Synonym: CLM_1761

Alternate gene names: 226948859

Gene position: 1800897-1802969 (Clockwise)

Preceding gene: 226948858

Following gene: 226948860

Centisome position: 43.34

GC content: 28.9

Gene sequence:

>2073_bases
ATGAAAAAGAACTCTAGTATAAAAAATAAACTTATAATTTCTTTTGTATCTTTGATTTTAGTATCGCTAGTTTTACTAGG
CTCTATAGTTTACACTAAAGTATACAATCAAACAAAAGAAGACTATGCTCAATCTATAGAAAAGCAAATTACCCAGGTGG
ATACTAGCTTTAATAATTATATTGTAGCCTTTGAAGAAAATATAGACATGTTTTCTAAAGGACTAAATAATTTAGATAAG
CAAGTAACTTCATATGTTGATAAGAAATATCAATCAAACGAAATACCTATGACCCCCCTAAAAAATGGAAGCTTTGAAGC
TTCTTTATATAAGGAGTTCGAAAATTTTACAAAAACTCACGATGGGATAGAAACTCTTTCTATATCTTCAGAAAGCAATG
GCGGATATATGCAGTATCCAGCAATTTCAAGAAAAAAAGGATATGATCCTAGAACTAGAGATTGGTATAATAAAGCTAAG
AAAAATAAGGACAAGGTTTCTTTTACAGATGTTTATAAAACCTCATCAGGATCTATGGTAATGTCAGTTATAAATCCAGT
TAAAGATTTAAATTCCAATTTTAAAGGAGTTATGACCTTTGATATAAACTTAAAAAAATTATCTGAAATGAGTAAAAATA
CTAAAGTAGGTGAAAATGGTTATTTTATTGTAACGGATGAAAAAGGAACAATAATAGCTAGCGGTAAAGATGAAAGTCTT
GTTTCCAAAAGTATAAAGGAGCTTAAAGTAGAAAATTTAAATGATTTATCAAAATATAAAAACAGTAGCTTTAGTACAAA
AATGGGTAATGGAAAAGAATATTTTATAAATGTAAAAAAATCCTCTAATGAAAAATTAGGATGGTATTACATATCTTTTG
TAGAAAAAGCAGAGCTTACAAGATCTGCAAATAGTATAGGTCTCATAACTTTAATTTTCACTATTATGTTTTCCATAGTT
GCAGTATTGGTATGTATATTTATATCTAATAAAATATCACAGCCTATTAAATATGCAGCGGAGCATATAAAAGAAATGGG
AAAAGGAAATTTTACAATTCCAATAGAAGAAAAATATTTTAAATTAGAGGATGAAATTGGAGATATTATAAAGTCCTTAA
ACAGAATGCAGAATTCTATAAAATCTATGCTAGGCAAGGTAAAGGAAAGTTCTGAAGTAGTTTCAGAAGAGGGAGAAAAG
TTGCTATCTGCTTCAGAAGAAATGACAGGTTCCTCAAGTGAAGTCTCAAATGCAATACATGACGTAGCTGTAGGAATTTC
AAATCAAGCTGGAGAACTTGTAAAGGCTACCACAACTATATCAAGTTTTGGAGAAAGGCTTGATATGGTGGTAGGTGAGT
TATCATCAATAAGCGAAAATTCTGTAAGTATAAATTTGGTAGCTAATGATAGCAATAAAAAGATGGTAAATATGATAGTA
TCTGTAAAAAGTATTGAAGAGTTTTTTAAGGATTTTTTAAATGTAATATCTAAACTGGATAATAATGTAGGTCAAATAAG
TGAGATGACAAATTTAATAAATAGTATTTCAGAGCAAACTAATCTTTTAGCTCTAAATGCAGCAATTGAAGCTGCAAGGG
CAGGAGAATCAGGAAAAGGATTTGCTGTGGTGGCAGATGAAATAAGAAAGCTAGCAGAAAGAAGCAAGGAATCTTCTGAA
AGTATAAATAAATTAGTAGAAAATATAGATAAAGATAAAAAAGATATTATAAATAATACTGAAAAAATGAAAGAAGAGCT
TGATAGTCAGTCTAAAACTATAGAGGAAACGATAGATGTATTTAAAAATATAATAGAAGCTATTGAGGATATTGTTCCTA
AAATACAAAATGTTAATAGTTCAGCCTATTCTATAAATGAAGAAAAAGATGAAGTTTTATCTAAGATGGAAGGAAGCTCA
GCTATTTCAGAAGAAATATCTGCCTCTTCAGAAGAAATAAGTGCTTCTTCTGAGGAAATGCATAATTGTTCAAAGGATGT
ATCTATATCTGCGGAGAAATTAAGTGAAATGACTAGGGCAATGAATGAAGAAGTAAATAAATTCAAAATATAA

Upstream 100 bases:

>100_bases
TAATTTATTGTAAAGAAATTTAATACATATAAACTAATATGTTAAATTTACGATTAATTACTGTATAGATAGACAAAATA
AAAAAAGGAGTATGAGTACA

Downstream 100 bases:

>100_bases
ATAATTTATTATAATTATAATAAATTAAACTGTGGTGACATTTATAGAAGCCTTTGGCATGAAAGTTTCCTTTTTAAGGA
ACTTTCATGTTTTTTTATAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 690; Mature: 690

Protein sequence:

>690_residues
MKKNSSIKNKLIISFVSLILVSLVLLGSIVYTKVYNQTKEDYAQSIEKQITQVDTSFNNYIVAFEENIDMFSKGLNNLDK
QVTSYVDKKYQSNEIPMTPLKNGSFEASLYKEFENFTKTHDGIETLSISSESNGGYMQYPAISRKKGYDPRTRDWYNKAK
KNKDKVSFTDVYKTSSGSMVMSVINPVKDLNSNFKGVMTFDINLKKLSEMSKNTKVGENGYFIVTDEKGTIIASGKDESL
VSKSIKELKVENLNDLSKYKNSSFSTKMGNGKEYFINVKKSSNEKLGWYYISFVEKAELTRSANSIGLITLIFTIMFSIV
AVLVCIFISNKISQPIKYAAEHIKEMGKGNFTIPIEEKYFKLEDEIGDIIKSLNRMQNSIKSMLGKVKESSEVVSEEGEK
LLSASEEMTGSSSEVSNAIHDVAVGISNQAGELVKATTTISSFGERLDMVVGELSSISENSVSINLVANDSNKKMVNMIV
SVKSIEEFFKDFLNVISKLDNNVGQISEMTNLINSISEQTNLLALNAAIEAARAGESGKGFAVVADEIRKLAERSKESSE
SINKLVENIDKDKKDIINNTEKMKEELDSQSKTIEETIDVFKNIIEAIEDIVPKIQNVNSSAYSINEEKDEVLSKMEGSS
AISEEISASSEEISASSEEMHNCSKDVSISAEKLSEMTRAMNEEVNKFKI

Sequences:

>Translated_690_residues
MKKNSSIKNKLIISFVSLILVSLVLLGSIVYTKVYNQTKEDYAQSIEKQITQVDTSFNNYIVAFEENIDMFSKGLNNLDK
QVTSYVDKKYQSNEIPMTPLKNGSFEASLYKEFENFTKTHDGIETLSISSESNGGYMQYPAISRKKGYDPRTRDWYNKAK
KNKDKVSFTDVYKTSSGSMVMSVINPVKDLNSNFKGVMTFDINLKKLSEMSKNTKVGENGYFIVTDEKGTIIASGKDESL
VSKSIKELKVENLNDLSKYKNSSFSTKMGNGKEYFINVKKSSNEKLGWYYISFVEKAELTRSANSIGLITLIFTIMFSIV
AVLVCIFISNKISQPIKYAAEHIKEMGKGNFTIPIEEKYFKLEDEIGDIIKSLNRMQNSIKSMLGKVKESSEVVSEEGEK
LLSASEEMTGSSSEVSNAIHDVAVGISNQAGELVKATTTISSFGERLDMVVGELSSISENSVSINLVANDSNKKMVNMIV
SVKSIEEFFKDFLNVISKLDNNVGQISEMTNLINSISEQTNLLALNAAIEAARAGESGKGFAVVADEIRKLAERSKESSE
SINKLVENIDKDKKDIINNTEKMKEELDSQSKTIEETIDVFKNIIEAIEDIVPKIQNVNSSAYSINEEKDEVLSKMEGSS
AISEEISASSEEISASSEEMHNCSKDVSISAEKLSEMTRAMNEEVNKFKI
>Mature_690_residues
MKKNSSIKNKLIISFVSLILVSLVLLGSIVYTKVYNQTKEDYAQSIEKQITQVDTSFNNYIVAFEENIDMFSKGLNNLDK
QVTSYVDKKYQSNEIPMTPLKNGSFEASLYKEFENFTKTHDGIETLSISSESNGGYMQYPAISRKKGYDPRTRDWYNKAK
KNKDKVSFTDVYKTSSGSMVMSVINPVKDLNSNFKGVMTFDINLKKLSEMSKNTKVGENGYFIVTDEKGTIIASGKDESL
VSKSIKELKVENLNDLSKYKNSSFSTKMGNGKEYFINVKKSSNEKLGWYYISFVEKAELTRSANSIGLITLIFTIMFSIV
AVLVCIFISNKISQPIKYAAEHIKEMGKGNFTIPIEEKYFKLEDEIGDIIKSLNRMQNSIKSMLGKVKESSEVVSEEGEK
LLSASEEMTGSSSEVSNAIHDVAVGISNQAGELVKATTTISSFGERLDMVVGELSSISENSVSINLVANDSNKKMVNMIV
SVKSIEEFFKDFLNVISKLDNNVGQISEMTNLINSISEQTNLLALNAAIEAARAGESGKGFAVVADEIRKLAERSKESSE
SINKLVENIDKDKKDIINNTEKMKEELDSQSKTIEETIDVFKNIIEAIEDIVPKIQNVNSSAYSINEEKDEVLSKMEGSS
AISEEISASSEEISASSEEMHNCSKDVSISAEKLSEMTRAMNEEVNKFKI

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=317, Percent_Identity=25.5520504731861, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI2367378, Length=263, Percent_Identity=27.3764258555133, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788195, Length=250, Percent_Identity=27.6, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788194, Length=361, Percent_Identity=24.6537396121884, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1789453, Length=297, Percent_Identity=25.2525252525253, Blast_Score=93, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 76832; Mature: 76832

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNSSIKNKLIISFVSLILVSLVLLGSIVYTKVYNQTKEDYAQSIEKQITQVDTSFNNY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IVAFEENIDMFSKGLNNLDKQVTSYVDKKYQSNEIPMTPLKNGSFEASLYKEFENFTKTH
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
DGIETLSISSESNGGYMQYPAISRKKGYDPRTRDWYNKAKKNKDKVSFTDVYKTSSGSMV
CCCEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHEECCCCCHH
MSVINPVKDLNSNFKGVMTFDINLKKLSEMSKNTKVGENGYFIVTDEKGTIIASGKDESL
HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCCHHH
VSKSIKELKVENLNDLSKYKNSSFSTKMGNGKEYFINVKKSSNEKLGWYYISFVEKAELT
HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
RSANSIGLITLIFTIMFSIVAVLVCIFISNKISQPIKYAAEHIKEMGKGNFTIPIEEKYF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECHHHHH
KLEDEIGDIIKSLNRMQNSIKSMLGKVKESSEVVSEEGEKLLSASEEMTGSSSEVSNAIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DVAVGISNQAGELVKATTTISSFGERLDMVVGELSSISENSVSINLVANDSNKKMVNMIV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
SVKSIEEFFKDFLNVISKLDNNVGQISEMTNLINSISEQTNLLALNAAIEAARAGESGKG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEHHHHHHHHHCCCCCCC
FAVVADEIRKLAERSKESSESINKLVENIDKDKKDIINNTEKMKEELDSQSKTIEETIDV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH
FKNIIEAIEDIVPKIQNVNSSAYSINEEKDEVLSKMEGSSAISEEISASSEEISASSEEM
HHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCHHHHHHHHCCHHHHCCCHHHH
HNCSKDVSISAEKLSEMTRAMNEEVNKFKI
HCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKNSSIKNKLIISFVSLILVSLVLLGSIVYTKVYNQTKEDYAQSIEKQITQVDTSFNNY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IVAFEENIDMFSKGLNNLDKQVTSYVDKKYQSNEIPMTPLKNGSFEASLYKEFENFTKTH
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
DGIETLSISSESNGGYMQYPAISRKKGYDPRTRDWYNKAKKNKDKVSFTDVYKTSSGSMV
CCCEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHEECCCCCHH
MSVINPVKDLNSNFKGVMTFDINLKKLSEMSKNTKVGENGYFIVTDEKGTIIASGKDESL
HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCCHHH
VSKSIKELKVENLNDLSKYKNSSFSTKMGNGKEYFINVKKSSNEKLGWYYISFVEKAELT
HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
RSANSIGLITLIFTIMFSIVAVLVCIFISNKISQPIKYAAEHIKEMGKGNFTIPIEEKYF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECHHHHH
KLEDEIGDIIKSLNRMQNSIKSMLGKVKESSEVVSEEGEKLLSASEEMTGSSSEVSNAIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DVAVGISNQAGELVKATTTISSFGERLDMVVGELSSISENSVSINLVANDSNKKMVNMIV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
SVKSIEEFFKDFLNVISKLDNNVGQISEMTNLINSISEQTNLLALNAAIEAARAGESGKG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEHHHHHHHHHCCCCCCC
FAVVADEIRKLAERSKESSESINKLVENIDKDKKDIINNTEKMKEELDSQSKTIEETIDV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH
FKNIIEAIEDIVPKIQNVNSSAYSINEEKDEVLSKMEGSSAISEEISASSEEISASSEEM
HHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCHHHHHHHHCCHHHHCCCHHHH
HNCSKDVSISAEKLSEMTRAMNEEVNKFKI
HCCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA