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The map label for this gene is ugpB [H]

Identifier: 226948851

GI number: 226948851

Start: 1791125

End: 1792486

Strand: Direct

Name: ugpB [H]

Synonym: CLM_1753

Alternate gene names: 226948851

Gene position: 1791125-1792486 (Clockwise)

Preceding gene: 226948850

Following gene: 226948853

Centisome position: 43.1

GC content: 30.62

Gene sequence:

>1362_bases
ATGAAATTTAAAAAATTAACGGCTCTTATTACAACATTTACATTAACCTTTGGGTTAGCGGCCTGTGGTAGCAATAAGGA
AGATGTATCAAAAAAGGAGGAGTCAAAAGCTACAATAGCCACAGAGATAAAAGAGCCTGTTACTATTGAATTTTGGCATG
CTATGAATGGTGATAATGAAGTTGCTCTAAAGGAGATAACAGAGGAATTCAACAAAAAAAATAAAGATAAGATAACAGTA
AAATTAGTATATCAAGGTCAGTATAAAGAATTATTTTCAAAGTTAGATGGTGCTGCTAAATCTAAAAAATTACCAGCATT
AACTATGATATATCCAAATAGATTAACAGCTTATGTTATGAATGATTTAGTAGAAAATCTAAATCCTTATATTGAAAATG
AAAAAATAGGATTTAAAAAGGATGTATGGGATGATATTCCTGAATTTGTAAGAGATAATGGTATGTGGAATGATAAACAT
TATTCACTCCCATTTAATAAAGGTACATATCTTCTTTTCTACAATGAGGATTTACTAAAAAAATATAATGTAAAAGTTCC
AAACAATTGGAATGAATTAAAAGAAGCTTCTAAAAAATTAACTGTAGATACTAATGGAGATGGAAAAAATGATATATATG
GTCTAGGATTAAATTCATCCGTAGGAATAGATTCAAGTTTTTGGGTAGAACAAGCAGGTGGACATTTAATAGATGAAGCC
AATGATAAACTTCTTTTCAATTCAAAAGAGGGAGCAGAAGCCTTTGACTTTTTATCAGAATTAGTTAAATCAGGTAATGC
TAAAATATCCACTGAAGAAAAATACATGACTGGTGCTTTTAGTAGGGGAGAAGCAGCTATGGGAATTTCTTCAATATCAG
CCTTGCCAGATATAATAAACGCTTGTAAAGGAAACAATATAAACTTTAAAACTGCAGTGCTACCACAAGGAAAGAAAAAA
GCAGCATTATTTTCAGGTACAGATGTAGCAATATTTAATACTCCTTCACCAGAAGAGAAATTAGCAGCCTTTGAATATTT
AAAATTCTTTATGGAAAAAGAAAGTCAAACAAAGTGGGCTACTAAATCAGGTTATTTACCACTTAGAAAATCTGTTATAG
ATTCAAAAGAATTTAAAGATTATGTAGAAAAAGAAAATCCAGCAAAGGGAGAAGCCGTTAAAGAATTTGATTATGGCTAC
TGTGATCCTAAAGTATTGAATGGATATGCTATACATGATAATATGGCTAAAGCCTTAGATCAGATAATAGCTGGAAAGAA
AGATTCAAAACAAGCTCTAAGTGATGCAGAAAAGAAAGCAAGACAAGAGTTAGATGAAGCTAAAAAAGCTTTTGGAAAGT
AG

Upstream 100 bases:

>100_bases
TGTATTACAAAAATATATAATATCTGGTATGACCAAATCTGGAATAAAGGGATAATTTGTTTTTAAATAAATTTAATATA
AATAAGTTGGAGGGGATAAA

Downstream 100 bases:

>100_bases
ACATAAAAATTAATAGTTATAGTACTTATTTTAGATAATATAAAAGAATAAAGATTTTATAATAAGAGATTCTAAATTCT
AAAAATTTACCCTATAGAGT

Product: carbohydrate uptake ABC transporter carbohydrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MKFKKLTALITTFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNEVALKEITEEFNKKNKDKITV
KLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVMNDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKH
YSLPFNKGTYLLFYNEDLLKKYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIINACKGNNINFKTAVLPQGKKK
AALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWATKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGY
CDPKVLNGYAIHDNMAKALDQIIAGKKDSKQALSDAEKKARQELDEAKKAFGK

Sequences:

>Translated_453_residues
MKFKKLTALITTFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNEVALKEITEEFNKKNKDKITV
KLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVMNDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKH
YSLPFNKGTYLLFYNEDLLKKYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIINACKGNNINFKTAVLPQGKKK
AALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWATKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGY
CDPKVLNGYAIHDNMAKALDQIIAGKKDSKQALSDAEKKARQELDEAKKAFGK
>Mature_453_residues
MKFKKLTALITTFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNEVALKEITEEFNKKNKDKITV
KLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVMNDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKH
YSLPFNKGTYLLFYNEDLLKKYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIINACKGNNINFKTAVLPQGKKK
AALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWATKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGY
CDPKVLNGYAIHDNMAKALDQIIAGKKDSKQALSDAEKKARQELDEAKKAFGK

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=426, Percent_Identity=23.7089201877934, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1787569, Length=355, Percent_Identity=25.0704225352113, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 50788; Mature: 50788

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKKLTALITTFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
VALKEITEEFNKKNKDKITVKLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVM
HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCHHHCCCCEEEEECCCHHHHHHH
NDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKHYSLPFNKGTYLLFYNEDLLK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECHHHHH
KYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
HCCCCCCCCHHHHHHHHHEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCEECCC
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIIN
CCCEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ACKGNNINFKTAVLPQGKKKAALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWA
HHCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
TKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGYCDPKVLNGYAIHDNMAKALD
CCCCCCHHHHHHHCHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHCCEEEHHHHHHHHH
QIIAGKKDSKQALSDAEKKARQELDEAKKAFGK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFKKLTALITTFTLTFGLAACGSNKEDVSKKEESKATIATEIKEPVTIEFWHAMNGDNE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
VALKEITEEFNKKNKDKITVKLVYQGQYKELFSKLDGAAKSKKLPALTMIYPNRLTAYVM
HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCHHHCCCCEEEEECCCHHHHHHH
NDLVENLNPYIENEKIGFKKDVWDDIPEFVRDNGMWNDKHYSLPFNKGTYLLFYNEDLLK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECHHHHH
KYNVKVPNNWNELKEASKKLTVDTNGDGKNDIYGLGLNSSVGIDSSFWVEQAGGHLIDEA
HCCCCCCCCHHHHHHHHHEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCEECCC
NDKLLFNSKEGAEAFDFLSELVKSGNAKISTEEKYMTGAFSRGEAAMGISSISALPDIIN
CCCEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ACKGNNINFKTAVLPQGKKKAALFSGTDVAIFNTPSPEEKLAAFEYLKFFMEKESQTKWA
HHCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
TKSGYLPLRKSVIDSKEFKDYVEKENPAKGEAVKEFDYGYCDPKVLNGYAIHDNMAKALD
CCCCCCHHHHHHHCHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHCCEEEHHHHHHHHH
QIIAGKKDSKQALSDAEKKARQELDEAKKAFGK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA