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The map label for this gene is ycdC [C]

Identifier: 226948846

GI number: 226948846

Start: 1786687

End: 1787310

Strand: Direct

Name: ycdC [C]

Synonym: CLM_1748

Alternate gene names: 226948846

Gene position: 1786687-1787310 (Clockwise)

Preceding gene: 226948845

Following gene: 226948847

Centisome position: 43.0

GC content: 26.28

Gene sequence:

>624_bases
ATGAATGATAATTTAAAGAATATACCAAAAGATAAAAAAGAGGCCATACTAGAAGCTGCGTTGGAAGAATTCGCTATAGG
TGGATATGAAAATGCCTCTACAAATAAAATAGTAGAAAAAGCGGGCATATCAAAGGGGCTTCTATTCCATTACTTTGGTA
ATAAGAAGGGATTATTTATATATGTATATAACTATTATTTTGAGTTTTTGAAAAGAGAGTTATATATAAAAGTAGATACA
AAGGAAAGGGATATTTTAGAACGAGTAAAAAAATGGACTATGATAAAGATGGAACTCATAGATAAATATCCCAGTGTATT
TATGCTATTTATAAAATCCACATTAAATATGCCTAAGGATATAAAATCTACTTTAGAAAAAATTCAATCAAAGGAAAGAA
AGGAAGCCTATGAAAACTTTTTATCTAATATAGATTATTCTAAATTTAAAGAGAATATTGACATACAGAAGTGCTTAAAA
ATATTAATGTGGACATTGGAGAAGTATGGTGAAGAATATATAATTCTTAATATAAATGAGCCTTTATTGGAAATAAATAA
AGATAATATTAAGAAAGAAATAGAAGAATATGTGGATATATTAAAGGCTGGCTTTTATAAATAG

Upstream 100 bases:

>100_bases
TAATATATTTAACCTATGAAATATCAAAAATATTCTCTAAGAGAAAAATTTTAGCCATATCTATGGTAGAGTTTACGAAG
ACTGAATAGGAGAAAAATTT

Downstream 100 bases:

>100_bases
TTTATTAATTATATAAAATGCTGACTAAAAATAGATTTAATTTTAATATAACAAATATAAAAAAATTAGGAAATGATTTA
GTTTATAGATTTAATTTTTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; AcrR Transcriptional Regulator TetR Family; Transcription Regulator; Regulatory Protein TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MNDNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFIYVYNYYFEFLKRELYIKVDT
KERDILERVKKWTMIKMELIDKYPSVFMLFIKSTLNMPKDIKSTLEKIQSKERKEAYENFLSNIDYSKFKENIDIQKCLK
ILMWTLEKYGEEYIILNINEPLLEINKDNIKKEIEEYVDILKAGFYK

Sequences:

>Translated_207_residues
MNDNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFIYVYNYYFEFLKRELYIKVDT
KERDILERVKKWTMIKMELIDKYPSVFMLFIKSTLNMPKDIKSTLEKIQSKERKEAYENFLSNIDYSKFKENIDIQKCLK
ILMWTLEKYGEEYIILNINEPLLEINKDNIKKEIEEYVDILKAGFYK
>Mature_207_residues
MNDNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFIYVYNYYFEFLKRELYIKVDT
KERDILERVKKWTMIKMELIDKYPSVFMLFIKSTLNMPKDIKSTLEKIQSKERKEAYENFLSNIDYSKFKENIDIQKCLK
ILMWTLEKYGEEYIILNINEPLLEINKDNIKKEIEEYVDILKAGFYK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24669; Mature: 24669

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEE
YVYNYYFEFLKRELYIKVDTKERDILERVKKWTMIKMELIDKYPSVFMLFIKSTLNMPKD
EHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IKSTLEKIQSKERKEAYENFLSNIDYSKFKENIDIQKCLKILMWTLEKYGEEYIILNINE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC
PLLEINKDNIKKEIEEYVDILKAGFYK
HHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNDNLKNIPKDKKEAILEAALEEFAIGGYENASTNKIVEKAGISKGLLFHYFGNKKGLFI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEE
YVYNYYFEFLKRELYIKVDTKERDILERVKKWTMIKMELIDKYPSVFMLFIKSTLNMPKD
EHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IKSTLEKIQSKERKEAYENFLSNIDYSKFKENIDIQKCLKILMWTLEKYGEEYIILNINE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC
PLLEINKDNIKKEIEEYVDILKAGFYK
HHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA