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The map label for this gene is ypsC [H]

Identifier: 226948817

GI number: 226948817

Start: 1752146

End: 1753288

Strand: Direct

Name: ypsC [H]

Synonym: CLM_1719

Alternate gene names: 226948817

Gene position: 1752146-1753288 (Clockwise)

Preceding gene: 226948816

Following gene: 226948818

Centisome position: 42.17

GC content: 31.93

Gene sequence:

>1143_bases
ATGGAATATACACTAATTGCCACAGCAACCTTTGGGTTAGAAAAAGTAGTAGCTAATGAATTAAAAGAATTAGGTTATGA
TGATTTAACAATAGAAAATGGTAAAGTTACCTTTGTAGGTGATGAAAGAGATATAGTTACATGTAATATGTGGCTTAGAA
CTGCAGATAGAGTTTTAATAAAAATGGCAGAGTTTAAAGCGGAAAGTTTTGAGGAGCTTTTTCAAGGAACTAAATCAGTA
CCTTGGGGAAAATATATTTCAGAAGATGGATTTATGCATGTTACAGGAAAATCTATTAAATCCGCACTACATAGTGTGCC
AGATTGTCAATCTATAGTAAAAAAAGCTGTAATAGAAGCTATGAAAAGAGAGTATGTTAAGGATTGGTTTAGCGAAGATG
GTGCAGAGTATAAAATAGAGGTAGGTATTTTAAAGGATATAGTTACATTAACATTGGATACTTCAGGCCAAGGACTTCAT
AAAAGAGGATATAGAGAAAACGCAGGAGAAGCTCCTCTTAAGGAAACATTAGCAGCAGCTTTGGTGCTTTTAAGTAAATG
GGAACCTTCAAGAATACTTTCAGATCCTATGTGTGGTTCTGGAACTATTGCCATAGAAGCAGCTTTGATAGGTAAAAATA
TAGCACCAGGTTTAAATAGAAATTTTGCAGCAGAGGCTTGGGATATAATACCTCTTAATATGTGGGAAGAAGTAAGGCGT
CATGCTAGAAACTCTATAAATAAAGAGGACTTTAGAATACTAGCTTCAGATATAAATGGCAGGATATTAAAGACGGCTAG
GGCTAATGCAGAAAAAGCAGGTGTTTCTGATTATATAGCTTTTCAAAAAATGCCTATGGAAGAGTTTAAATCAAAAAAGA
AATATGGATTTATAATAACTAATCCACCTTATGGTGAAAGGTTAAATACTTTAAAAGAAGTAGAAAAAATTTATAAAAAT
TTAGGCGTAGTATACTCCGATTTACAAGATTGGTCTTGCTTTGTATTAACTTCTTATGAAGGATTTGAAAAAATATTTGG
GAAAAAATCAGATAAAAATAGAAAACTATATAACGGAAGATTAAAATGTTATTACTACCAATATATAGGATTAGAGCCTC
CTAAAAAACATTATGAAAAGTAA

Upstream 100 bases:

>100_bases
AATTCAATATATATAATCAATTATGATAGATTAATAAAATTATAAGAAAATTTATTCAGTATATGAAACACAAATTATAT
TTAAAGTAGGAGATGAAAAA

Downstream 100 bases:

>100_bases
TATTTAAAGGATATAGATTCAAGTATTAATTTATTATATAAGTTTATTTCGATAGTTTAATATAGGACACTACTTAATAT
AAAACCCACTAGCTAAAGTT

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MEYTLIATATFGLEKVVANELKELGYDDLTIENGKVTFVGDERDIVTCNMWLRTADRVLIKMAEFKAESFEELFQGTKSV
PWGKYISEDGFMHVTGKSIKSALHSVPDCQSIVKKAVIEAMKREYVKDWFSEDGAEYKIEVGILKDIVTLTLDTSGQGLH
KRGYRENAGEAPLKETLAAALVLLSKWEPSRILSDPMCGSGTIAIEAALIGKNIAPGLNRNFAAEAWDIIPLNMWEEVRR
HARNSINKEDFRILASDINGRILKTARANAEKAGVSDYIAFQKMPMEEFKSKKKYGFIITNPPYGERLNTLKEVEKIYKN
LGVVYSDLQDWSCFVLTSYEGFEKIFGKKSDKNRKLYNGRLKCYYYQYIGLEPPKKHYEK

Sequences:

>Translated_380_residues
MEYTLIATATFGLEKVVANELKELGYDDLTIENGKVTFVGDERDIVTCNMWLRTADRVLIKMAEFKAESFEELFQGTKSV
PWGKYISEDGFMHVTGKSIKSALHSVPDCQSIVKKAVIEAMKREYVKDWFSEDGAEYKIEVGILKDIVTLTLDTSGQGLH
KRGYRENAGEAPLKETLAAALVLLSKWEPSRILSDPMCGSGTIAIEAALIGKNIAPGLNRNFAAEAWDIIPLNMWEEVRR
HARNSINKEDFRILASDINGRILKTARANAEKAGVSDYIAFQKMPMEEFKSKKKYGFIITNPPYGERLNTLKEVEKIYKN
LGVVYSDLQDWSCFVLTSYEGFEKIFGKKSDKNRKLYNGRLKCYYYQYIGLEPPKKHYEK
>Mature_380_residues
MEYTLIATATFGLEKVVANELKELGYDDLTIENGKVTFVGDERDIVTCNMWLRTADRVLIKMAEFKAESFEELFQGTKSV
PWGKYISEDGFMHVTGKSIKSALHSVPDCQSIVKKAVIEAMKREYVKDWFSEDGAEYKIEVGILKDIVTLTLDTSGQGLH
KRGYRENAGEAPLKETLAAALVLLSKWEPSRILSDPMCGSGTIAIEAALIGKNIAPGLNRNFAAEAWDIIPLNMWEEVRR
HARNSINKEDFRILASDINGRILKTARANAEKAGVSDYIAFQKMPMEEFKSKKKYGFIITNPPYGERLNTLKEVEKIYKN
LGVVYSDLQDWSCFVLTSYEGFEKIFGKKSDKNRKLYNGRLKCYYYQYIGLEPPKKHYEK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=375, Percent_Identity=31.4666666666667, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43204; Mature: 43204

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYTLIATATFGLEKVVANELKELGYDDLTIENGKVTFVGDERDIVTCNMWLRTADRVLI
CCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCEEEEHHHHHHHHHHHH
KMAEFKAESFEELFQGTKSVPWGKYISEDGFMHVTGKSIKSALHSVPDCQSIVKKAVIEA
HHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHH
MKREYVKDWFSEDGAEYKIEVGILKDIVTLTLDTSGQGLHKRGYRENAGEAPLKETLAAA
HHHHHHHHHHCCCCCEEEEEEEHHHEEEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHH
LVLLSKWEPSRILSDPMCGSGTIAIEAALIGKNIAPGLNRNFAAEAWDIIPLNMWEEVRR
HHHHHCCCCHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHH
HARNSINKEDFRILASDINGRILKTARANAEKAGVSDYIAFQKMPMEEFKSKKKYGFIIT
HHHHCCCHHHHEEEECCCCCEEEEHHHCCCHHCCCHHHHHHHCCCHHHHHCCCCCEEEEC
NPPYGERLNTLKEVEKIYKNLGVVYSDLQDWSCFVLTSYEGFEKIFGKKSDKNRKLYNGR
CCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCCCEECCE
LKCYYYQYIGLEPPKKHYEK
EEEEEEEEECCCCCHHHCCC
>Mature Secondary Structure
MEYTLIATATFGLEKVVANELKELGYDDLTIENGKVTFVGDERDIVTCNMWLRTADRVLI
CCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCEEEEHHHHHHHHHHHH
KMAEFKAESFEELFQGTKSVPWGKYISEDGFMHVTGKSIKSALHSVPDCQSIVKKAVIEA
HHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHH
MKREYVKDWFSEDGAEYKIEVGILKDIVTLTLDTSGQGLHKRGYRENAGEAPLKETLAAA
HHHHHHHHHHCCCCCEEEEEEEHHHEEEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHH
LVLLSKWEPSRILSDPMCGSGTIAIEAALIGKNIAPGLNRNFAAEAWDIIPLNMWEEVRR
HHHHHCCCCHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHH
HARNSINKEDFRILASDINGRILKTARANAEKAGVSDYIAFQKMPMEEFKSKKKYGFIIT
HHHHCCCHHHHEEEECCCCCEEEEHHHCCCHHCCCHHHHHHHCCCHHHHHCCCCCEEEEC
NPPYGERLNTLKEVEKIYKNLGVVYSDLQDWSCFVLTSYEGFEKIFGKKSDKNRKLYNGR
CCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCHHHHHHHCCCCCCCCCEECCE
LKCYYYQYIGLEPPKKHYEK
EEEEEEEEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]