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The map label for this gene is ydfM [H]

Identifier: 226948540

GI number: 226948540

Start: 1486439

End: 1487314

Strand: Reverse

Name: ydfM [H]

Synonym: CLM_1432

Alternate gene names: 226948540

Gene position: 1487314-1486439 (Counterclockwise)

Preceding gene: 226948547

Following gene: 226948522

Centisome position: 35.79

GC content: 28.31

Gene sequence:

>876_bases
ATGAAAAATGAAGAAAGGTTAAAAATAGGTAATAAAGTTTCTAATATAACCATTGTAGTAAATATAATTTTGTCCTTTAT
AAAAATACTATTTGGAATCATAGGACATAGTGCTGCTACTATTGCAGACGGTATACATTCTCTCTCTGATGTTTTAAGCA
CTATTGCAGTAATCATAGGTCTTAAAATTTCTTCTAAACCTGCAGATAAGGATCACCCTTATGGTCATGAAAAACTTGAA
GCAGTAACTTCTAAATTATTAGCTACTATGTTATTTTTAACTGCTTTGTTCATAGGTTATAGTGGAATAAAGGTTATAAT
AAATAAAGATTTTTCTGTTCCTTCAAAAATAACTATTTATGTTGCTATTTTATCCATAGTCACAAAGGAATGGATGTACA
GATATACTTTAAAAGCAGCTAAAAAAATAAACAGTACAGTCCTTGAAGCAGATGCTTGGCATCATAGATCAGATTCTTTT
TCATCTATAGGAACACTTATAGGAATAGTTGGAGCTAGACTTAAATATCCAATATTAGACCCTATAGCATCTTTAGTAAT
ATGTATATTTATAATTAAAGTTTCTATAGATATTTATAAGAATTCTATAAATCAACTTGTAGATCACTGTGCTGATGAAA
AAACCATTAATATGATAACAGAACAAATTAAATCTATTAAAGAAGTAGAAAGAATAGATGAATTAAAAACTAGGCTTCAT
GGAAGCAAACTTTATGTAGATGTAGAGATTGCTCTTGATTATAGCTTATCTTTAAAAGAATCTCATAGCATAGCAGAAAA
GGTCCATAACCAAATAGAAGCAAGCAACAATGATATTATTCATTGTATGGTTCATGTAAATCCCTATGAAGAATAA

Upstream 100 bases:

>100_bases
CAATTGATAAATCATTTCTATCTTTATTTTGTTGCATTTATGCTATGTTTAGCATATAATAATATAAATGTTTATTTTCA
ATTAATAATGAGGTGGGGAA

Downstream 100 bases:

>100_bases
TAAAGTTTTATCTTAAGATACCTTATTTAACTTTGAAAGCTGTCAAAAATATGTCTTTAATTTTAATATAGCAAAGATAA
AGAATATAGGTAATAATATA

Product: cation efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKNEERLKIGNKVSNITIVVNIILSFIKILFGIIGHSAATIADGIHSLSDVLSTIAVIIGLKISSKPADKDHPYGHEKLE
AVTSKLLATMLFLTALFIGYSGIKVIINKDFSVPSKITIYVAILSIVTKEWMYRYTLKAAKKINSTVLEADAWHHRSDSF
SSIGTLIGIVGARLKYPILDPIASLVICIFIIKVSIDIYKNSINQLVDHCADEKTINMITEQIKSIKEVERIDELKTRLH
GSKLYVDVEIALDYSLSLKESHSIAEKVHNQIEASNNDIIHCMVHVNPYEE

Sequences:

>Translated_291_residues
MKNEERLKIGNKVSNITIVVNIILSFIKILFGIIGHSAATIADGIHSLSDVLSTIAVIIGLKISSKPADKDHPYGHEKLE
AVTSKLLATMLFLTALFIGYSGIKVIINKDFSVPSKITIYVAILSIVTKEWMYRYTLKAAKKINSTVLEADAWHHRSDSF
SSIGTLIGIVGARLKYPILDPIASLVICIFIIKVSIDIYKNSINQLVDHCADEKTINMITEQIKSIKEVERIDELKTRLH
GSKLYVDVEIALDYSLSLKESHSIAEKVHNQIEASNNDIIHCMVHVNPYEE
>Mature_291_residues
MKNEERLKIGNKVSNITIVVNIILSFIKILFGIIGHSAATIADGIHSLSDVLSTIAVIIGLKISSKPADKDHPYGHEKLE
AVTSKLLATMLFLTALFIGYSGIKVIINKDFSVPSKITIYVAILSIVTKEWMYRYTLKAAKKINSTVLEADAWHHRSDSF
SSIGTLIGIVGARLKYPILDPIASLVICIFIIKVSIDIYKNSINQLVDHCADEKTINMITEQIKSIKEVERIDELKTRLH
GSKLYVDVEIALDYSLSLKESHSIAEKVHNQIEASNNDIIHCMVHVNPYEE

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=270, Percent_Identity=22.5925925925926, Blast_Score=82, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115533508, Length=286, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533506, Length=286, Percent_Identity=23.0769230769231, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI72000060, Length=285, Percent_Identity=23.5087719298246, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI72000062, Length=285, Percent_Identity=23.5087719298246, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325032, Length=259, Percent_Identity=28.5714285714286, Blast_Score=106, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6323831, Length=230, Percent_Identity=30, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 32423; Mature: 32423

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNEERLKIGNKVSNITIVVNIILSFIKILFGIIGHSAATIADGIHSLSDVLSTIAVIIG
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LKISSKPADKDHPYGHEKLEAVTSKLLATMLFLTALFIGYSGIKVIINKDFSVPSKITIY
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
VAILSIVTKEWMYRYTLKAAKKINSTVLEADAWHHRSDSFSSIGTLIGIVGARLKYPILD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
PIASLVICIFIIKVSIDIYKNSINQLVDHCADEKTINMITEQIKSIKEVERIDELKTRLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSKLYVDVEIALDYSLSLKESHSIAEKVHNQIEASNNDIIHCMVHVNPYEE
CCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKNEERLKIGNKVSNITIVVNIILSFIKILFGIIGHSAATIADGIHSLSDVLSTIAVIIG
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LKISSKPADKDHPYGHEKLEAVTSKLLATMLFLTALFIGYSGIKVIINKDFSVPSKITIY
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
VAILSIVTKEWMYRYTLKAAKKINSTVLEADAWHHRSDSFSSIGTLIGIVGARLKYPILD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
PIASLVICIFIIKVSIDIYKNSINQLVDHCADEKTINMITEQIKSIKEVERIDELKTRLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSKLYVDVEIALDYSLSLKESHSIAEKVHNQIEASNNDIIHCMVHVNPYEE
CCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]