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The map label for this gene is ydiP [C]

Identifier: 226948465

GI number: 226948465

Start: 1413069

End: 1413959

Strand: Reverse

Name: ydiP [C]

Synonym: CLM_1351

Alternate gene names: 226948465

Gene position: 1413959-1413069 (Counterclockwise)

Preceding gene: 226948475

Following gene: 226948460

Centisome position: 34.03

GC content: 28.06

Gene sequence:

>891_bases
ATGAACAAAAACTGGCTAGATGAGGTTAAAAAATTACCCTCTGTTGATTCAAATATTAGATTTTTTGGGGGACATAAGCA
TAGTGTTGAAAAAGGTTGGTCAGTTTCAGAGGAATATCATTATGCATTTGAAATTTTGATAGTTCTAGATGGTAAGCAGC
TAACAAAAGCTAATCAACATGAATATACAATTAATAAGAATGAAATCATCTTAATACCACCAGGATATAGACATACAAAT
ACCTGTATTTCTAAAGAGGGTATGACCTATTTCTGTGCTCATTTTGATATAGATGAGCCGCAAATTCATCATGATTTAAT
ATGCTATTGTAATTTTATATTTACAGAAGAAAATGAAATACATCCGCATTTAAAGAATATTTTAATTAAATGGATTAACT
TATTAAATGCTGATACTTCTTCTATTCTTACCAAATTACAAACTGAAATTATACTAATTGAATTAATTACAGAACTGCTT
AAATATTGTGAAATAAAAAGAGTATTAGATGTTGAAAGTAATGATAGCAGACTTTATTATGCTCGTTGTATATCTGAAAA
AATCAGACAAAACTTCCGTGAATTTTCTCTTAATCCATCTGAAGATAAGTTGGAAACACTAACAATTAAGTATATAGCTA
ATCAACTAAACATAAGCACCGGGTATTTATTAGTTAACTTTAAGTCTGTTTATAATATTTCACCTAAGAACTATCTTAGT
CAACTAAAATTTAATGAAGCCAAAATACTTTTAGGTCAACCTACCATTACTCTATCTGAAATAAGTGAACGTATAGGCTA
TAGAAATGTTTCTCATTTTAGTCGTCAATTTAAATTATGGAGTGGAATCAGCCCCTATGAGTTTAGAAATATCTTACAAA
TAAAAAAATAA

Upstream 100 bases:

>100_bases
TTATCTTTATTGCACTTTAATTTTATAATCAACTTATGATAAAATCTATATCATAAATGAATGGATTTATACCATTTTTA
AATGTATTGGAGTGAAAATT

Downstream 100 bases:

>100_bases
TATGCTAGCTAAATAAAAAAGCTTAAATGAGCAGGTAAAAATTTAGATTTTATTATCCAAGTTGTTCGACATAAATATAA
ATGGATTTCTTCTACAATAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; Arac/Xyls Family Transcriptional Regulator

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNKNWLDEVKKLPSVDSNIRFFGGHKHSVEKGWSVSEEYHYAFEILIVLDGKQLTKANQHEYTINKNEIILIPPGYRHTN
TCISKEGMTYFCAHFDIDEPQIHHDLICYCNFIFTEENEIHPHLKNILIKWINLLNADTSSILTKLQTEIILIELITELL
KYCEIKRVLDVESNDSRLYYARCISEKIRQNFREFSLNPSEDKLETLTIKYIANQLNISTGYLLVNFKSVYNISPKNYLS
QLKFNEAKILLGQPTITLSEISERIGYRNVSHFSRQFKLWSGISPYEFRNILQIKK

Sequences:

>Translated_296_residues
MNKNWLDEVKKLPSVDSNIRFFGGHKHSVEKGWSVSEEYHYAFEILIVLDGKQLTKANQHEYTINKNEIILIPPGYRHTN
TCISKEGMTYFCAHFDIDEPQIHHDLICYCNFIFTEENEIHPHLKNILIKWINLLNADTSSILTKLQTEIILIELITELL
KYCEIKRVLDVESNDSRLYYARCISEKIRQNFREFSLNPSEDKLETLTIKYIANQLNISTGYLLVNFKSVYNISPKNYLS
QLKFNEAKILLGQPTITLSEISERIGYRNVSHFSRQFKLWSGISPYEFRNILQIKK
>Mature_296_residues
MNKNWLDEVKKLPSVDSNIRFFGGHKHSVEKGWSVSEEYHYAFEILIVLDGKQLTKANQHEYTINKNEIILIPPGYRHTN
TCISKEGMTYFCAHFDIDEPQIHHDLICYCNFIFTEENEIHPHLKNILIKWINLLNADTSSILTKLQTEIILIELITELL
KYCEIKRVLDVESNDSRLYYARCISEKIRQNFREFSLNPSEDKLETLTIKYIANQLNISTGYLLVNFKSVYNISPKNYLS
QLKFNEAKILLGQPTITLSEISERIGYRNVSHFSRQFKLWSGISPYEFRNILQIKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787987, Length=85, Percent_Identity=36.4705882352941, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34774; Mature: 34774

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNWLDEVKKLPSVDSNIRFFGGHKHSVEKGWSVSEEYHYAFEILIVLDGKQLTKANQH
CCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCCC
EYTINKNEIILIPPGYRHTNTCISKEGMTYFCAHFDIDEPQIHHDLICYCNFIFTEENEI
CEEECCCEEEEECCCCCCCCCEECCCCCEEEEEEECCCCCCHHHHEEEEEEEEEECCCCC
HPHLKNILIKWINLLNADTSSILTKLQTEIILIELITELLKYCEIKRVLDVESNDSRLYY
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHH
ARCISEKIRQNFREFSLNPSEDKLETLTIKYIANQLNISTGYLLVNFKSVYNISPKNYLS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHEECCHHHHHH
QLKFNEAKILLGQPTITLSEISERIGYRNVSHFSRQFKLWSGISPYEFRNILQIKK
HHCCCCCEEEECCCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNKNWLDEVKKLPSVDSNIRFFGGHKHSVEKGWSVSEEYHYAFEILIVLDGKQLTKANQH
CCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCCC
EYTINKNEIILIPPGYRHTNTCISKEGMTYFCAHFDIDEPQIHHDLICYCNFIFTEENEI
CEEECCCEEEEECCCCCCCCCEECCCCCEEEEEEECCCCCCHHHHEEEEEEEEEECCCCC
HPHLKNILIKWINLLNADTSSILTKLQTEIILIELITELLKYCEIKRVLDVESNDSRLYY
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHH
ARCISEKIRQNFREFSLNPSEDKLETLTIKYIANQLNISTGYLLVNFKSVYNISPKNYLS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHEECCHHHHHH
QLKFNEAKILLGQPTITLSEISERIGYRNVSHFSRQFKLWSGISPYEFRNILQIKK
HHCCCCCEEEECCCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA