Click here to switch to the map view.

The map label for this gene is pocR [H]

Identifier: 226948320

GI number: 226948320

Start: 1242804

End: 1243442

Strand: Reverse

Name: pocR [H]

Synonym: CLM_1200

Alternate gene names: 226948320

Gene position: 1243442-1242804 (Counterclockwise)

Preceding gene: 226948328

Following gene: 226948319

Centisome position: 29.92

GC content: 24.57

Gene sequence:

>639_bases
ATGTTTCAAGATTTATTTGATGATAATAACATCTATGAAAAATTAGATAAGGATTCTATGACTAGTAATGGCTACTACAC
TATAAATATTAATGCTTTAAATAAAGTTAACTTTACATCTTTTTATATTTGCCCTAAAACTGTTCATAAAGGTGTATATA
TCATAGGACCATATTCTTCATCTAAAGGAAATAACAAGGGTATACCCTATAAGCCTCTTTGCTGTATTCCTCATTTGATT
TCTCTTTTAAGAAATATAGCTTTAGATAGTAGATACATTAAGGAAAAAGTTCTTACACGTAAAATGCCAAATAGTCTCCA
TATTAGAAAGGCTATGGATCTTTTAGATGCGAATTATAGTGATGATATATCTTTAGATGATATATCTCGACATTTAAAAA
TAAATAAATCTTATTTTTGTTCTATATTAAAAAAAGAAACTGGGAAAACTTTTTCTCAGCTTGTAAATGAAATTAGAATA
GAAAAAAGTAAAGAACTTTTAACAAAAAATGATTTATCTATATTAGAAATTGCTCTTTCTGTTGGATTTAATAATCAAAA
TTATTTCAGTTCAACTTTTAAAAAATTTAATAATAAAACTCCAATTGAATTTAGAAATGAAAACCTCATACTTCAATAG

Upstream 100 bases:

>100_bases
TATATGTTCTATTGCTGAAAAGTTCTTTTTATGTACAAATATACCGATAAAGTCTTTTAGTTACAAAGGTGACTTAATAG
ATTCGAGAGGATATAATTAC

Downstream 100 bases:

>100_bases
AAATAGTTTTAACACTTATGTTAATAAAATAAAAAGTGATCTATTCAAATACAAGCTGGAGATTTGTGTAATTTACAGAA
CTATTATAAAATATTACTAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MFQDLFDDNNIYEKLDKDSMTSNGYYTININALNKVNFTSFYICPKTVHKGVYIIGPYSSSKGNNKGIPYKPLCCIPHLI
SLLRNIALDSRYIKEKVLTRKMPNSLHIRKAMDLLDANYSDDISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRI
EKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKTPIEFRNENLILQ

Sequences:

>Translated_212_residues
MFQDLFDDNNIYEKLDKDSMTSNGYYTININALNKVNFTSFYICPKTVHKGVYIIGPYSSSKGNNKGIPYKPLCCIPHLI
SLLRNIALDSRYIKEKVLTRKMPNSLHIRKAMDLLDANYSDDISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRI
EKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKTPIEFRNENLILQ
>Mature_212_residues
MFQDLFDDNNIYEKLDKDSMTSNGYYTININALNKVNFTSFYICPKTVHKGVYIIGPYSSSKGNNKGIPYKPLCCIPHLI
SLLRNIALDSRYIKEKVLTRKMPNSLHIRKAMDLLDANYSDDISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRI
EKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKTPIEFRNENLILQ

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=100, Percent_Identity=30, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 24515; Mature: 24515

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQDLFDDNNIYEKLDKDSMTSNGYYTININALNKVNFTSFYICPKTVHKGVYIIGPYSS
CCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEECEECCEEEEECHHHHHCCEEEEECCCC
SKGNNKGIPYKPLCCIPHLISLLRNIALDSRYIKEKVLTRKMPNSLHIRKAMDLLDANYS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
DDISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRIEKSKELLTKNDLSILEIALS
CCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VGFNNQNYFSSTFKKFNNKTPIEFRNENLILQ
HCCCCCHHHHHHHHHHCCCCCCEECCCCEEEC
>Mature Secondary Structure
MFQDLFDDNNIYEKLDKDSMTSNGYYTININALNKVNFTSFYICPKTVHKGVYIIGPYSS
CCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEECEECCEEEEECHHHHHCCEEEEECCCC
SKGNNKGIPYKPLCCIPHLISLLRNIALDSRYIKEKVLTRKMPNSLHIRKAMDLLDANYS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
DDISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRIEKSKELLTKNDLSILEIALS
CCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VGFNNQNYFSSTFKKFNNKTPIEFRNENLILQ
HCCCCCHHHHHHHHHHCCCCCCEECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]