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The map label for this gene is yodJ [H]

Identifier: 226948309

GI number: 226948309

Start: 1231063

End: 1231863

Strand: Direct

Name: yodJ [H]

Synonym: CLM_1189

Alternate gene names: 226948309

Gene position: 1231063-1231863 (Clockwise)

Preceding gene: 226948307

Following gene: 226948310

Centisome position: 29.63

GC content: 27.09

Gene sequence:

>801_bases
ATGAGAAATAGAAGACAGAAAAAACAAATATTAAGAAGAGTTAATTTTATAATAACTATAGTTATAATTTTATGTACTAT
ACAGATATTATCAAATAAATATAACAGAAGTATACAATCTAAAAGAGTACAAGCTATTAAAGAAAAGGAAACTATTAGTG
AAAATAATAAACAACAAACTATTAAAAAAAAGGAGACTAATAGTAAAAATAATAAACAGCAAGCTTTAAAACAAAGCTTA
TTATTAGTAAATAGAGATAATAAGCTAGATGAACATTATCTACCTAATGATCTTACTGTACCTAATATAAGATTTTTAGG
AAATAGTAATTTTGAAGTAAGAAGACTAAGGAGAGTGGCTAGTGGAGCTTTAGAAAATCTTTTCCAGGAAGCTAAAAATG
AGAATATAATATTATTAGGGGTATCAGGATATAGAAACTATCATTATCAGGTAAATGTTTATAATAATTCGGTTTATAGA
AATGGACAACAGCATGCGGATAAGTATGTTGCACAACCAGGAACAAGTGAACATCAAACAGGTTTAGCTATGGATATAGT
TTCAACTGAGTATACTAATTTAGATGAGAATTTTGTTAATACTAGGGCGTATAAATGGCTTAAAGAAAATTGTTATAAGT
ATGGATTTATAATTAGATACCCAAAGGAAAAAGAAGATATTACTGGTTATAATTTCGAGCCTTGGCATATAAGGTATGTA
GGAATAGAGGTAGCTACAGAGATTATGAATAAGGGTATTACTTTAGAGGAATATTTACAGGAAGGTAATTGTAATAAATG
A

Upstream 100 bases:

>100_bases
CATTGTTTTTTATGGTAATAAATTTAATAACTATAAAAAAGTAATAAAATTTTTTTAGCCTTTTTTCTAATAAAATTAAT
TAGGATATAGGAGGATATAC

Downstream 100 bases:

>100_bases
AAAAGTTAGTATTTATAAAGAAAATTTAATAGTTTTATTTTTATAATAGTTATTATTAGAACTTTATGTTTTATAGAGGG
CTCAGCAGATAAAAATAGCA

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRNRRQKKQILRRVNFIITIVIILCTIQILSNKYNRSIQSKRVQAIKEKETISENNKQQTIKKKETNSKNNKQQALKQSL
LLVNRDNKLDEHYLPNDLTVPNIRFLGNSNFEVRRLRRVASGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYR
NGQQHADKYVAQPGTSEHQTGLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
GIEVATEIMNKGITLEEYLQEGNCNK

Sequences:

>Translated_266_residues
MRNRRQKKQILRRVNFIITIVIILCTIQILSNKYNRSIQSKRVQAIKEKETISENNKQQTIKKKETNSKNNKQQALKQSL
LLVNRDNKLDEHYLPNDLTVPNIRFLGNSNFEVRRLRRVASGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYR
NGQQHADKYVAQPGTSEHQTGLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
GIEVATEIMNKGITLEEYLQEGNCNK
>Mature_266_residues
MRNRRQKKQILRRVNFIITIVIILCTIQILSNKYNRSIQSKRVQAIKEKETISENNKQQTIKKKETNSKNNKQQALKQSL
LLVNRDNKLDEHYLPNDLTVPNIRFLGNSNFEVRRLRRVASGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYR
NGQQHADKYVAQPGTSEHQTGLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
GIEVATEIMNKGITLEEYLQEGNCNK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 31319; Mature: 31319

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRRQKKQILRRVNFIITIVIILCTIQILSNKYNRSIQSKRVQAIKEKETISENNKQQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
IKKKETNSKNNKQQALKQSLLLVNRDNKLDEHYLPNDLTVPNIRFLGNSNFEVRRLRRVA
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
SGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYRNGQQHADKYVAQPGTSEHQT
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCHHCCCHHHHHHHHCCCCCCCCCC
GLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
CEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEE
GIEVATEIMNKGITLEEYLQEGNCNK
HHHHHHHHHHCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MRNRRQKKQILRRVNFIITIVIILCTIQILSNKYNRSIQSKRVQAIKEKETISENNKQQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
IKKKETNSKNNKQQALKQSLLLVNRDNKLDEHYLPNDLTVPNIRFLGNSNFEVRRLRRVA
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
SGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYRNGQQHADKYVAQPGTSEHQT
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCHHCCCHHHHHHHHCCCCCCCCCC
GLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
CEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEE
GIEVATEIMNKGITLEEYLQEGNCNK
HHHHHHHHHHCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]