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The map label for this gene is ykuD [H]

Identifier: 226948166

GI number: 226948166

Start: 1091610

End: 1091987

Strand: Reverse

Name: ykuD [H]

Synonym: CLM_1040

Alternate gene names: 226948166

Gene position: 1091987-1091610 (Counterclockwise)

Preceding gene: 226948167

Following gene: 226948162

Centisome position: 26.28

GC content: 34.92

Gene sequence:

>378_bases
ATGCTTTATTATCTATATCCATACAATCAATCTTACAGAGCAATCTATCGTATAGTGATAAATACGAAAGCTCACACTCT
CACTTTATTTAGAAACAATAATGTATACAAAACTTATAAAGTTGCCGTTGGAAAGCCCTCCACCCCAACACCTAAAGGGA
CTTTTAAAATAATTAATCGTGCCATAAACCCAGGTGGTCCTTTTGGTGCAAGATGGTTAGGCTTGAATATACCTTATGGG
GACTATGGAATCCATGGTACAAACAATCCTTCTTCAATTGGGAAAAGCGTGTCTAACGGATGTATAAGAATGTTTAATAA
CCAAGTTATTGAGTTAAGTAACCTTGTTCCTATAGGTACAACAGTTACAATAGTATAA

Upstream 100 bases:

>100_bases
TCTTCTTTCAAATTTTCATCTTATTTATTACTCAATTCTTTCACAGATTGATGTAATTAGGAATATCCTGTTTATATAGT
TATATTGGGAGAAATAATCA

Downstream 100 bases:

>100_bases
TCTTATGCATTTATAGGTACTAGACACTACCCTCAGTTAACACAAATTAATATAGTTAAATGAGGGTAAATATTTATTTT
TCATTTTCTTGGGCTGTATT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: Spore protein YkuD [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MLYYLYPYNQSYRAIYRIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINRAINPGGPFGARWLGLNIPYG
DYGIHGTNNPSSIGKSVSNGCIRMFNNQVIELSNLVPIGTTVTIV

Sequences:

>Translated_125_residues
MLYYLYPYNQSYRAIYRIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINRAINPGGPFGARWLGLNIPYG
DYGIHGTNNPSSIGKSVSNGCIRMFNNQVIELSNLVPIGTTVTIV
>Mature_125_residues
MLYYLYPYNQSYRAIYRIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINRAINPGGPFGARWLGLNIPYG
DYGIHGTNNPSSIGKSVSNGCIRMFNNQVIELSNLVPIGTTVTIV

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 13901; Mature: 13901

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYYLYPYNQSYRAIYRIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINR
CEEEEECCCCCCEEEEEEEEECCCEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHEEHH
AINPGGPFGARWLGLNIPYGDYGIHGTNNPSSIGKSVSNGCIRMFNNQVIELSNLVPIGT
HCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEECCEEECCE
TVTIV
EEEEC
>Mature Secondary Structure
MLYYLYPYNQSYRAIYRIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINR
CEEEEECCCCCCEEEEEEEEECCCEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHEEHH
AINPGGPFGARWLGLNIPYGDYGIHGTNNPSSIGKSVSNGCIRMFNNQVIELSNLVPIGT
HCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEECCEEECCE
TVTIV
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]