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The map label for this gene is tetD [H]

Identifier: 226948157

GI number: 226948157

Start: 1083899

End: 1084645

Strand: Direct

Name: tetD [H]

Synonym: CLM_1029

Alternate gene names: 226948157

Gene position: 1083899-1084645 (Clockwise)

Preceding gene: 226948156

Following gene: 226948159

Centisome position: 26.08

GC content: 24.77

Gene sequence:

>747_bases
ATGAATTATATTAAATCATTAGAAAAAGCAATTATATACATTGAGAAAAATTTGAATGAAGATTTAAAAACGGAGGATGT
AGCAAAGTCTATTGGCTATTCTTACTATCATTTCACTCGTTTATTTGAAGGATTGTTAGGTGAGACTACTGGAAATTATA
TACGAAAAAGAAGAATTACAAAAGCAGCGCAAGATTTAATATATACAGATAAAAAAATTATAGATATAGCATTAGATTTT
CAATTTAAATCACCAGAAGCATTTGCAAGAGCGTTTAAAAAAATATATGATACTAGCCCTACTGAATATAGAAAAAATAG
AATTGATGTACTTAAGGGTAATAAGAAATATATAGATAATGAAAGATTAAAGCATATTTTGAATAATATTACCATTCAGC
CAGTAATTAAAGTTATACCTGAAGTTAAAGTTATAGGTATAAAAGGAAAGACTTCACTAAAAAATAATTTATTGCCTGAT
TTATGGAATGCTTTTAATAAAAGTAGTTCCAAAATAATAAATAAGGTTAAACCACTTAAATATTATGGAATTTCCGAAAA
TGATAGACCCAATAATCAATTTGGCGAAAATGTATCATACAGTGAAATTGTTGGTATAGAAGTTACTTCTTTTGACTATA
TATATTCCTATAAAATAGAGCATGGTATTTTGGATAAAATTTTTTGTTCCAAGTTACATTTTTTACATTATTATTTTTGT
ATAAGATATTTGTTTAAGATTGGATAA

Upstream 100 bases:

>100_bases
CCAAAAGATTTTTATGAATTAATATAAGAAGTTAAAAAAGGGGGCTAAGTTAACGTAGTGATGTGAAGTATATAATCAAG
AAAGGATTTTGTGATGTATT

Downstream 100 bases:

>100_bases
AATTACAGTTTTTACTTTTACCTATAGATCAACCTCCTACTCCATTAACTTTAAGCATAAAAAATCCCCTGTAAGGTACA
CGTACTCTTTTCTGTGTCTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: ORFR [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNYIKSLEKAIIYIEKNLNEDLKTEDVAKSIGYSYYHFTRLFEGLLGETTGNYIRKRRITKAAQDLIYTDKKIIDIALDF
QFKSPEAFARAFKKIYDTSPTEYRKNRIDVLKGNKKYIDNERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPD
LWNAFNKSSSKIINKVKPLKYYGISENDRPNNQFGENVSYSEIVGIEVTSFDYIYSYKIEHGILDKIFCSKLHFLHYYFC
IRYLFKIG

Sequences:

>Translated_248_residues
MNYIKSLEKAIIYIEKNLNEDLKTEDVAKSIGYSYYHFTRLFEGLLGETTGNYIRKRRITKAAQDLIYTDKKIIDIALDF
QFKSPEAFARAFKKIYDTSPTEYRKNRIDVLKGNKKYIDNERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPD
LWNAFNKSSSKIINKVKPLKYYGISENDRPNNQFGENVSYSEIVGIEVTSFDYIYSYKIEHGILDKIFCSKLHFLHYYFC
IRYLFKIG
>Mature_248_residues
MNYIKSLEKAIIYIEKNLNEDLKTEDVAKSIGYSYYHFTRLFEGLLGETTGNYIRKRRITKAAQDLIYTDKKIIDIALDF
QFKSPEAFARAFKKIYDTSPTEYRKNRIDVLKGNKKYIDNERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPD
LWNAFNKSSSKIINKVKPLKYYGISENDRPNNQFGENVSYSEIVGIEVTSFDYIYSYKIEHGILDKIFCSKLHFLHYYFC
IRYLFKIG

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=106, Percent_Identity=37.7358490566038, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=35.5769230769231, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081928, Length=106, Percent_Identity=33.0188679245283, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29074; Mature: 29074

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYIKSLEKAIIYIEKNLNEDLKTEDVAKSIGYSYYHFTRLFEGLLGETTGNYIRKRRIT
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
KAAQDLIYTDKKIIDIALDFQFKSPEAFARAFKKIYDTSPTEYRKNRIDVLKGNKKYIDN
HHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCH
ERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPDLWNAFNKSSSKIINKVKPLK
HHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCHHHCCCHHHHHHHCCHHHHHHHHCCCCE
YYGISENDRPNNQFGENVSYSEIVGIEVTSFDYIYSYKIEHGILDKIFCSKLHFLHYYFC
EECCCCCCCCCCCCCCCCCHHHEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
IRYLFKIG
HHHHHHCC
>Mature Secondary Structure
MNYIKSLEKAIIYIEKNLNEDLKTEDVAKSIGYSYYHFTRLFEGLLGETTGNYIRKRRIT
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
KAAQDLIYTDKKIIDIALDFQFKSPEAFARAFKKIYDTSPTEYRKNRIDVLKGNKKYIDN
HHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCH
ERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPDLWNAFNKSSSKIINKVKPLK
HHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCHHHCCCHHHHHHHCCHHHHHHHHCCCCE
YYGISENDRPNNQFGENVSYSEIVGIEVTSFDYIYSYKIEHGILDKIFCSKLHFLHYYFC
EECCCCCCCCCCCCCCCCCHHHEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
IRYLFKIG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]