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The map label for this gene is ydeE [H]

Identifier: 226948149

GI number: 226948149

Start: 1072149

End: 1073387

Strand: Direct

Name: ydeE [H]

Synonym: CLM_1017

Alternate gene names: 226948149

Gene position: 1072149-1073387 (Clockwise)

Preceding gene: 226948148

Following gene: 226948150

Centisome position: 25.8

GC content: 31.88

Gene sequence:

>1239_bases
ATGTATTTCAGCATTGGTTACGAAAGAACATTGATTAAGATATTTAATATCACAATTAATATCAAAATAAAATATTGGAG
ATATGTTACTATTTTTAGAAAGGAGGAATATTTGATGATAGACACCAATATGAAAAGAATACTAGATTTTGTGGAGCAGA
ACTTAACAGAGGATTTTTCTCTAAACAAGCTGGCAAGGCATTGCAATTTTTCACCCTATTATTGTTCTATTATTTTTCAT
AGGTATTTTGGTGAAACCATGAAAAGCTACATGCAAAAGCGACGCCTGCTTTGTGCTGCAAAGGAGCTTAAAAGTACTAA
TGACAGAATTGTTGATATTGCAATAAAATACGGTTATTCATCCCAAGAGGCATTTTCAAGAGCGTTTTCTGATATGATTG
GAATGGCGCCGAAAAGGTTTCGTGAAAATCCTCTGCCTATTGCTGTTTATCAGAAAAATAGTTCTCCGCCATTTCAGAAT
AAGGAGAACACGGCAATGAAAAATGAAACTATTAAGAATGTACAAGGTGAAATTGAAAGAAATTATCCATTAAAAACATT
GCATATTTTAAATGGCTTGTGTATGCTTGATTCTTTTCAAAAAAATGACCTTATGAGTGAAAAAGCCATATATATTCCAT
TTAATGAAGCTATGTGTTGGGGTGAAACGAATGAAAAAATCTTCTCATCTGAATTTATCGAAAAAAGAGCGTATTCTCTC
AACTCTACACTAGAAGAGTATAAAAAAATTGTAATAGAGCCGCTAAAGCCGTTGTTTGATGAACAGTTTGACATTATCGT
TTTATGGTTTGGTGACGATATGTTCTGCCAGATGAACTTTATTACGATTCTTGCGTATTTGGAACAAATTCATTTTGATG
GTGATGTACTTTTTTGCATGGCACAAGAGCAAACAGATAAAATGTTATCAGATGCTGTGGAAATTGATATAGATGGTTAT
AATTATATCTATAAAACTATACTTTGCGATAGAAAAAAATGTGATGTAAAATTGCTACCCGTCACTTATCAGGCAATGAA
TTTATATCTTTGCTATCGAGAAAAAAATAGCGATATCATACGCTATATCAAAAGTAATCTTAATAAAGAAAATATCGTAG
GAGAATTACTTACACTATTTCCTCAGTACGGACTTGGAGATTTACAATATAAGTGGATGATTGAAGAAATAAAGAAGGGA
AAGGCTATATGGAAGTTGAACCTTATAAAGAGTCATTAG

Upstream 100 bases:

>100_bases
TGCGAATTTGAAACTATTAATGATTTTGTTAAAAAATACTGTTGTGGATTAGAAGTCATGGATACAGGAGAGCATTATTT
TCATACAGAAGAACAGTTGA

Downstream 100 bases:

>100_bases
AGAATAATTTAAAGAAACCTTTTATAATATAAAATTATAATAAGAGTAAATAAAAATAACGGAGGAGAACCAAGTCCAGA
TAATTGAGGCGGTTCTCCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MYFSIGYERTLIKIFNITINIKIKYWRYVTIFRKEEYLMIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFH
RYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYGYSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQN
KENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDSFQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSL
NSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQMNFITILAYLEQIHFDGDVLFCMAQEQTDKMLSDAVEIDIDGY
NYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSDIIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKG
KAIWKLNLIKSH

Sequences:

>Translated_412_residues
MYFSIGYERTLIKIFNITINIKIKYWRYVTIFRKEEYLMIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFH
RYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYGYSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQN
KENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDSFQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSL
NSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQMNFITILAYLEQIHFDGDVLFCMAQEQTDKMLSDAVEIDIDGY
NYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSDIIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKG
KAIWKLNLIKSH
>Mature_412_residues
MYFSIGYERTLIKIFNITINIKIKYWRYVTIFRKEEYLMIDTNMKRILDFVEQNLTEDFSLNKLARHCNFSPYYCSIIFH
RYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYGYSSQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQN
KENTAMKNETIKNVQGEIERNYPLKTLHILNGLCMLDSFQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSL
NSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQMNFITILAYLEQIHFDGDVLFCMAQEQTDKMLSDAVEIDIDGY
NYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSDIIRYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKG
KAIWKLNLIKSH

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=95, Percent_Identity=29.4736842105263, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=29.5918367346939, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 48897; Mature: 48897

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFSIGYERTLIKIFNITINIKIKYWRYVTIFRKEEYLMIDTNMKRILDFVEQNLTEDFS
CEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCC
LNKLARHCNFSPYYCSIIFHRYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYGYS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
SQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQNKENTAMKNETIKNVQGEIER
CHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHCC
NYPLKTLHILNGLCMLDSFQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSL
CCCCHHHHHHCCHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHH
NSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQMNFITILAYLEQIHFDGDVLFCM
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCEEEEE
AQEQTDKMLSDAVEIDIDGYNYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSDII
ECHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEEECCCCHHH
RYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKGKAIWKLNLIKSH
HHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEECC
>Mature Secondary Structure
MYFSIGYERTLIKIFNITINIKIKYWRYVTIFRKEEYLMIDTNMKRILDFVEQNLTEDFS
CEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCC
LNKLARHCNFSPYYCSIIFHRYFGETMKSYMQKRRLLCAAKELKSTNDRIVDIAIKYGYS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
SQEAFSRAFSDMIGMAPKRFRENPLPIAVYQKNSSPPFQNKENTAMKNETIKNVQGEIER
CHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHCC
NYPLKTLHILNGLCMLDSFQKNDLMSEKAIYIPFNEAMCWGETNEKIFSSEFIEKRAYSL
CCCCHHHHHHCCHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHH
NSTLEEYKKIVIEPLKPLFDEQFDIIVLWFGDDMFCQMNFITILAYLEQIHFDGDVLFCM
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCEEEEE
AQEQTDKMLSDAVEIDIDGYNYIYKTILCDRKKCDVKLLPVTYQAMNLYLCYREKNSDII
ECHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEEECCCCHHH
RYIKSNLNKENIVGELLTLFPQYGLGDLQYKWMIEEIKKGKAIWKLNLIKSH
HHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]