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The map label for this gene is ydeL [H]

Identifier: 226948143

GI number: 226948143

Start: 1067603

End: 1069039

Strand: Direct

Name: ydeL [H]

Synonym: CLM_1011

Alternate gene names: 226948143

Gene position: 1067603-1069039 (Clockwise)

Preceding gene: 226948139

Following gene: 226948145

Centisome position: 25.69

GC content: 32.01

Gene sequence:

>1437_bases
GTGGAAATACAGATTACATTAAAAAGAAATACTAGTGTTCCATTATACATTCAAATATATGAAGTATATCGAAGTGCAAT
ACTTAGTAATCATTTAGAGCCGAATTCAAAACTTGCTTCAATAATGCAACTAAAACAATTGCTTTGTGTAAGTCGCAATA
CAATTGAGATGGCGTACTTGCAACTTTTATCAGAAGGATTTATTTATAGTAAAAGTGGGAGCGGATATTTTGTATCCGAT
TTGGATAATTATGAGTCATTAGATTATTCCAATAATCAATCTAGTTCCAAAGAAATTAGTATACGTCCAATAGAAAGTTT
GCATTTAAGCAGATCTCATGCAAAGTACGATTTTAAGCCAGGGTCAGTTGAGCATAATCAGTTTCCATTCAAAAAATGGA
ATAGAGTCGCTGAAAACATAATGAGCTTAGAGAATGAAGAGATTTTAATATACTCAGATCCACGGGGAGAATCATTACTT
CGTATTGAAATATCTAAATACCTTAAGTGCTCACGAGGAGTTAATTGCCATCCTGATCAGATTATTATAGGTGCAGGGAC
TCAAACTCTTATTAGTTTACTTTGTTTCATACTAGGTAAAAACAAGCCTTTAAAAGTAGCTGTAGAAGATCCAGGATTTA
CAGCTGTTAGAAAAGCATTTGAATGGAATGGTTGTGATATCATGCCAATTAGTTTAAATAACAATGTATTCGATATCTCA
ATGCTTAAAAGTAAATTAGATTGTCCTTCTGCTATATATCTAACACCTTCAAATCAACATCCTATGGGTGGTCTCCTAAA
CGTTTCTGAGAGATTGAATCTATTAAACTGGTCTAAGAACAAAGATACTTATATTATTGAAGATGATTATGATAGTGAAT
TCCGATATAACATCCATCCTGTTCCAACAATATTTAGTCTCGATCAATTTGAAAAAGTAATATACCTAGGTACATTTTCT
AAAACATTGTTTCCAGCTATGCATATTGGTTATATTGTTTTACCCAAGAATATCGCAGAAGAATTTGTGGAAATAGGATG
CTATTATAATCAAACTGCATCAAAAATCCATCAGCTTACCATAGCTGAATTTATGAAAAGTGGATATTTTGAACAACATA
TAAGAAAAATGAGAACTTTATATGCAAAAAAACATAAGAAGATTGTTGATTCCATAAAGAACGTTTTTGGTAGTCATGCT
CATATCATTGGAGATCATGCTGGTGTGAATTTAGCTCTTCGAGTTAATAGACCTTACTCTGAAAGTGACCTTATCCAAAG
AGCTAAAGAAGTTGGTGTTATTGTATATCCAATTTCCTTCTATCATTCAAATCAAAAAAGTACAAATAAACATAATGATA
TCTTCCTTGGCTATGGGCATATGAAACTTGAAGAGATTGAACATGGGATTACACTCTTGGGAGAAGCATGGTTATAA

Upstream 100 bases:

>100_bases
TGGATTGCATTGATAATCATCAGTTGATTTGCTATAATTATATAGCAGTATCATCCCTATAAAAAGGGATGGTTAGTGAA
TATTTTATGGGGTTGGTTTT

Downstream 100 bases:

>100_bases
GGAAGCTGTCTCAAAATATATTTTATTATGAGGCAGCCTCTTGTTTTTTTATAGTAAGCATTTAATGAATTTTAATTTTA
AAAATGATTATAGAAAACAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MEIQITLKRNTSVPLYIQIYEVYRSAILSNHLEPNSKLASIMQLKQLLCVSRNTIEMAYLQLLSEGFIYSKSGSGYFVSD
LDNYESLDYSNNQSSSKEISIRPIESLHLSRSHAKYDFKPGSVEHNQFPFKKWNRVAENIMSLENEEILIYSDPRGESLL
RIEISKYLKCSRGVNCHPDQIIIGAGTQTLISLLCFILGKNKPLKVAVEDPGFTAVRKAFEWNGCDIMPISLNNNVFDIS
MLKSKLDCPSAIYLTPSNQHPMGGLLNVSERLNLLNWSKNKDTYIIEDDYDSEFRYNIHPVPTIFSLDQFEKVIYLGTFS
KTLFPAMHIGYIVLPKNIAEEFVEIGCYYNQTASKIHQLTIAEFMKSGYFEQHIRKMRTLYAKKHKKIVDSIKNVFGSHA
HIIGDHAGVNLALRVNRPYSESDLIQRAKEVGVIVYPISFYHSNQKSTNKHNDIFLGYGHMKLEEIEHGITLLGEAWL

Sequences:

>Translated_478_residues
MEIQITLKRNTSVPLYIQIYEVYRSAILSNHLEPNSKLASIMQLKQLLCVSRNTIEMAYLQLLSEGFIYSKSGSGYFVSD
LDNYESLDYSNNQSSSKEISIRPIESLHLSRSHAKYDFKPGSVEHNQFPFKKWNRVAENIMSLENEEILIYSDPRGESLL
RIEISKYLKCSRGVNCHPDQIIIGAGTQTLISLLCFILGKNKPLKVAVEDPGFTAVRKAFEWNGCDIMPISLNNNVFDIS
MLKSKLDCPSAIYLTPSNQHPMGGLLNVSERLNLLNWSKNKDTYIIEDDYDSEFRYNIHPVPTIFSLDQFEKVIYLGTFS
KTLFPAMHIGYIVLPKNIAEEFVEIGCYYNQTASKIHQLTIAEFMKSGYFEQHIRKMRTLYAKKHKKIVDSIKNVFGSHA
HIIGDHAGVNLALRVNRPYSESDLIQRAKEVGVIVYPISFYHSNQKSTNKHNDIFLGYGHMKLEEIEHGITLLGEAWL
>Mature_478_residues
MEIQITLKRNTSVPLYIQIYEVYRSAILSNHLEPNSKLASIMQLKQLLCVSRNTIEMAYLQLLSEGFIYSKSGSGYFVSD
LDNYESLDYSNNQSSSKEISIRPIESLHLSRSHAKYDFKPGSVEHNQFPFKKWNRVAENIMSLENEEILIYSDPRGESLL
RIEISKYLKCSRGVNCHPDQIIIGAGTQTLISLLCFILGKNKPLKVAVEDPGFTAVRKAFEWNGCDIMPISLNNNVFDIS
MLKSKLDCPSAIYLTPSNQHPMGGLLNVSERLNLLNWSKNKDTYIIEDDYDSEFRYNIHPVPTIFSLDQFEKVIYLGTFS
KTLFPAMHIGYIVLPKNIAEEFVEIGCYYNQTASKIHQLTIAEFMKSGYFEQHIRKMRTLYAKKHKKIVDSIKNVFGSHA
HIIGDHAGVNLALRVNRPYSESDLIQRAKEVGVIVYPISFYHSNQKSTNKHNDIFLGYGHMKLEEIEHGITLLGEAWL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=418, Percent_Identity=23.6842105263158, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790797, Length=362, Percent_Identity=24.3093922651934, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54685; Mature: 54685

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIQITLKRNTSVPLYIQIYEVYRSAILSNHLEPNSKLASIMQLKQLLCVSRNTIEMAYL
CEEEEEEECCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
QLLSEGFIYSKSGSGYFVSDLDNYESLDYSNNQSSSKEISIRPIESLHLSRSHAKYDFKP
HHHHCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCC
GSVEHNQFPFKKWNRVAENIMSLENEEILIYSDPRGESLLRIEISKYLKCSRGVNCHPDQ
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHHHHHCCCCCCCCCE
IIIGAGTQTLISLLCFILGKNKPLKVAVEDPGFTAVRKAFEWNGCDIMPISLNNNVFDIS
EEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCEEEHH
MLKSKLDCPSAIYLTPSNQHPMGGLLNVSERLNLLNWSKNKDTYIIEDDYDSEFRYNIHP
HHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHEECCCCCCEEEEECCCCCCEEEECCC
VPTIFSLDQFEKVIYLGTFSKTLFPAMHIGYIVLPKNIAEEFVEIGCYYNQTASKIHQLT
CCCEECHHHHCEEEEEECCHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHH
IAEFMKSGYFEQHIRKMRTLYAKKHKKIVDSIKNVFGSHAHIIGDHAGVNLALRVNRPYS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCC
ESDLIQRAKEVGVIVYPISFYHSNQKSTNKHNDIFLGYGHMKLEEIEHGITLLGEAWL
HHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCEEEEECCEEHHHHHCCCEEECCCCC
>Mature Secondary Structure
MEIQITLKRNTSVPLYIQIYEVYRSAILSNHLEPNSKLASIMQLKQLLCVSRNTIEMAYL
CEEEEEEECCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
QLLSEGFIYSKSGSGYFVSDLDNYESLDYSNNQSSSKEISIRPIESLHLSRSHAKYDFKP
HHHHCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCC
GSVEHNQFPFKKWNRVAENIMSLENEEILIYSDPRGESLLRIEISKYLKCSRGVNCHPDQ
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHHHHHCCCCCCCCCE
IIIGAGTQTLISLLCFILGKNKPLKVAVEDPGFTAVRKAFEWNGCDIMPISLNNNVFDIS
EEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCEEEHH
MLKSKLDCPSAIYLTPSNQHPMGGLLNVSERLNLLNWSKNKDTYIIEDDYDSEFRYNIHP
HHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHEECCCCCCEEEEECCCCCCEEEECCC
VPTIFSLDQFEKVIYLGTFSKTLFPAMHIGYIVLPKNIAEEFVEIGCYYNQTASKIHQLT
CCCEECHHHHCEEEEEECCHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHH
IAEFMKSGYFEQHIRKMRTLYAKKHKKIVDSIKNVFGSHAHIIGDHAGVNLALRVNRPYS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCC
ESDLIQRAKEVGVIVYPISFYHSNQKSTNKHNDIFLGYGHMKLEEIEHGITLLGEAWL
HHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCEEEEECCEEHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]