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The map label for this gene is sigV [H]

Identifier: 226948114

GI number: 226948114

Start: 1039787

End: 1040299

Strand: Direct

Name: sigV [H]

Synonym: CLM_0979

Alternate gene names: 226948114

Gene position: 1039787-1040299 (Clockwise)

Preceding gene: 226948113

Following gene: 226948115

Centisome position: 25.02

GC content: 26.51

Gene sequence:

>513_bases
ATGAATACAGAGGAGTTGGCTATTAAAGCAAAAAGTGGAGATGAAAAGGCTTTTTGCGAACTTATAAAAATTAATAAAGA
GGTTCTATATAAAACAGCGTTTTATTATACAAAGAACGAACATGATTCATTAGAAATATTAGATGATACCGTTTATAAAG
CCTATAAATCAATTAAAAAATTAAAACAGGAAAAATATTTTAATACTTGGCTAATGAGAATACTCATAAATAACTGTATC
ACATACATAAATAAAAGAAAAAGGTTGATATTCTTTAGAAAAAATATTGATATTATTGAAAAACATGAATCAACTGATAA
CAGAGAAGGATTATTGGATTTATATAAAGCTATTGATACATTAGAGGATAAGTTTAAGATGATAATAATACTTAGGTACT
TTAATGATTTAACCGTTCCTCAGATAGCTGATATTATGGACTACCCTATCGGGACAGTAAAGACTTATATCCATAAAGCT
TTAAAACAACTAAGAATTGAATTGGAGGTATAG

Upstream 100 bases:

>100_bases
AAATTTCAAAATAAATAAAACGAAAGTATAGTTTGAAATGTCTAATAGATAGCAGGTTATTATCAGTAATAATATTATAT
CTTACTTGGAGGATTACTAT

Downstream 100 bases:

>100_bases
GAGCATGGATTATGACAAGAAATCTTTTAGAGAAAAACTAGAATTAATAGAAGTTCCAGAGGAAGTTGATTTAGTTATAG
ATGAAGCTATTAAGAGAGCT

Product: ECF family RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MNTEELAIKAKSGDEKAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKKLKQEKYFNTWLMRILINNCI
TYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDTLEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKA
LKQLRIELEV

Sequences:

>Translated_170_residues
MNTEELAIKAKSGDEKAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKKLKQEKYFNTWLMRILINNCI
TYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDTLEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKA
LKQLRIELEV
>Mature_170_residues
MNTEELAIKAKSGDEKAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKKLKQEKYFNTWLMRILINNCI
TYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDTLEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKA
LKQLRIELEV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=167, Percent_Identity=27.5449101796407, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20344; Mature: 20344

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEELAIKAKSGDEKAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKK
CCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
LKQEKYFNTWLMRILINNCITYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHH
LEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKALKQLRIELEV
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTEELAIKAKSGDEKAFCELIKINKEVLYKTAFYYTKNEHDSLEILDDTVYKAYKSIKK
CCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
LKQEKYFNTWLMRILINNCITYINKRKRLIFFRKNIDIIEKHESTDNREGLLDLYKAIDT
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHH
LEDKFKMIIILRYFNDLTVPQIADIMDYPIGTVKTYIHKALKQLRIELEV
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]