Click here to switch to the map view.

The map label for this gene is hsp18 [H]

Identifier: 226948109

GI number: 226948109

Start: 1033608

End: 1034048

Strand: Direct

Name: hsp18 [H]

Synonym: CLM_0974

Alternate gene names: 226948109

Gene position: 1033608-1034048 (Clockwise)

Preceding gene: 226948108

Following gene: 226948110

Centisome position: 24.87

GC content: 26.08

Gene sequence:

>441_bases
ATGTTTGAACTGATTCCTTTTAGAGAAGATGATTTAGCTAGACACGATGATTTTTTTTCACCATTTGTAAAAAATTTCTT
TAATGATGATTACTTTACAGAAATGAGTAATATCCATAAAAACTTTAATGTGGATTTAAAGGAGACAGATGAAAATTATT
TAATAGAAGCGGATCTTCCAGGAACAAAAAAAGAGGATATATCTATAGATTTTCACAACAATTATTTAGTAATCAATGCA
AAAAGACAAGAATCAGTAGAAGATAAAAAAGAAAACTATGTTAGGCGTGAAAGACATTATGGTGAATTTAAGAGAAACTT
CTATATAGATAATGCTGATGAAAATAAAATAGATGCTTCATTTAATAATGGGGTTTTAAAGATTACTATTCCTAAAACAA
ATCAAGATAACAACAAAAGAAAAAAGATTGAGATACATTAA

Upstream 100 bases:

>100_bases
ATTTTTAATATACTCCTCCAATAATATATATATAAACTAATATTATTAGTTTATATGCAATAAGTAAAAAATATAAAATA
AATAAAGGAGGCGTTTAATA

Downstream 100 bases:

>100_bases
AAATGTAGATTTTAAAAATAACTATTGCTCATTACCTTACGTCATGTGTTAATATAATAATATAAATTAGTGTAGGATAT
ATATCCTACACTAATTTATT

Product: heat shock protein

Products: NA

Alternate protein names: HSP 18 [H]

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MFELIPFREDDLARHDDFFSPFVKNFFNDDYFTEMSNIHKNFNVDLKETDENYLIEADLPGTKKEDISIDFHNNYLVINA
KRQESVEDKKENYVRRERHYGEFKRNFYIDNADENKIDASFNNGVLKITIPKTNQDNNKRKKIEIH

Sequences:

>Translated_146_residues
MFELIPFREDDLARHDDFFSPFVKNFFNDDYFTEMSNIHKNFNVDLKETDENYLIEADLPGTKKEDISIDFHNNYLVINA
KRQESVEDKKENYVRRERHYGEFKRNFYIDNADENKIDASFNNGVLKITIPKTNQDNNKRKKIEIH
>Mature_146_residues
MFELIPFREDDLARHDDFFSPFVKNFFNDDYFTEMSNIHKNFNVDLKETDENYLIEADLPGTKKEDISIDFHNNYLVINA
KRQESVEDKKENYVRRERHYGEFKRNFYIDNADENKIDASFNNGVLKITIPKTNQDNNKRKKIEIH

Specific function: Probable chaperone [H]

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17591; Mature: 17591

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELIPFREDDLARHDDFFSPFVKNFFNDDYFTEMSNIHKNFNVDLKETDENYLIEADLP
CCCCCCCCCCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCEEEEECCC
GTKKEDISIDFHNNYLVINAKRQESVEDKKENYVRRERHYGEFKRNFYIDNADENKIDAS
CCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCC
FNNGVLKITIPKTNQDNNKRKKIEIH
CCCCEEEEEECCCCCCCCCEEEEEEC
>Mature Secondary Structure
MFELIPFREDDLARHDDFFSPFVKNFFNDDYFTEMSNIHKNFNVDLKETDENYLIEADLP
CCCCCCCCCCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCEEEEECCC
GTKKEDISIDFHNNYLVINAKRQESVEDKKENYVRRERHYGEFKRNFYIDNADENKIDAS
CCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCC
FNNGVLKITIPKTNQDNNKRKKIEIH
CCCCEEEEEECCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501044; 11466286 [H]