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The map label for this gene is dapB [H]

Identifier: 226948081

GI number: 226948081

Start: 1001768

End: 1002565

Strand: Direct

Name: dapB [H]

Synonym: CLM_0942

Alternate gene names: 226948081

Gene position: 1001768-1002565 (Clockwise)

Preceding gene: 226948080

Following gene: 226948082

Centisome position: 24.11

GC content: 32.08

Gene sequence:

>798_bases
ATGAAGATAATAGTTATTGGACCAAGGGGAAAAATGGGAAGCTTGGTTACTAAATCTTGTTATAATAATGAAAATATAGA
ACTTGTAGCAGCAGTAGCACCGAAGGGAAGGGATTACATAGGACAAGATCTTGGTATAGTTGCAAATCTAGGCAAAAATA
TAGATTGTAAAGTTGTAGATAATTTAGATAATGTTATAGATAAATGTGATTGCATTATAGATTTTACAGATCCAGAAACT
TCTATGGATGTATTTGAAAAGGCTTTAAAGAGTAAAAAATCTGTGGTTTGTGGTACTACTGGGTTTTCAGAAGAAGAAAT
AAATAGGATAAATGAAATTTCAAAGGAAATACCAGTGGTTCTAGCAGGAAATACTTCTATGGTTGTAAATCTTATGTATA
AATTAGTAGAGCTCGCGGCTAATACTATAGGCAATATGTCTGATATTGAAATAATAGAAATGCATGATAGATATAAAAAG
GATGCTCCAAGTGGAACTTCTTTAGAAATTGGAGAAGTTTTAGCTAAAACATTTAATAAGGAATTGAAAGAATTAGCTCA
ATTCGGAAGATGTGGAAAAGGTGAAAGAGAAGAAGGAAAAATTGCATATCATTCCTTAAGAGCAGGAGATATTTCAAGTA
GTCATACAGTTATGTTTGGTCTTATGGGAGAAAGATTAGAAATAACTCATCATGCTCATAATTGGGAGTGTTTTGCCAAT
GGAGGCTGTCAAGCTGCCTTATTTTTAAGAGACAAAAAACCAGGAATATATTCCATGAAAGACGTATTAGGTTTATAA

Upstream 100 bases:

>100_bases
GAATGAAATTATACATAATCTAATAAATTTTTTCCTAAATAAAAAATGCTTAAATAAAAAATGCTTATTTATTTAGGAAA
ATAAACAGGGGGTTATACTA

Downstream 100 bases:

>100_bases
AAATATTTAGGAGATGATTTTGTGAAGAATTTTGTATCTACTAAATGGTTACAGGACCATTTAGAAGATGAAAATATAGT
CATTGTAGATTGTAGAGGAG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKIIVIGPRGKMGSLVTKSCYNNENIELVAAVAPKGRDYIGQDLGIVANLGKNIDCKVVDNLDNVIDKCDCIIDFTDPET
SMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPVVLAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKK
DAPSGTSLEIGEVLAKTFNKELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
GGCQAALFLRDKKPGIYSMKDVLGL

Sequences:

>Translated_265_residues
MKIIVIGPRGKMGSLVTKSCYNNENIELVAAVAPKGRDYIGQDLGIVANLGKNIDCKVVDNLDNVIDKCDCIIDFTDPET
SMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPVVLAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKK
DAPSGTSLEIGEVLAKTFNKELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
GGCQAALFLRDKKPGIYSMKDVLGL
>Mature_265_residues
MKIIVIGPRGKMGSLVTKSCYNNENIELVAAVAPKGRDYIGQDLGIVANLGKNIDCKVVDNLDNVIDKCDCIIDFTDPET
SMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPVVLAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKK
DAPSGTSLEIGEVLAKTFNKELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
GGCQAALFLRDKKPGIYSMKDVLGL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=266, Percent_Identity=42.1052631578947, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29095; Mature: 29095

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIVIGPRGKMGSLVTKSCYNNENIELVAAVAPKGRDYIGQDLGIVANLGKNIDCKVVD
CEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHCCCHHHHHHCCCCCCEEECC
NLDNVIDKCDCIIDFTDPETSMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPVV
CHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
LAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKKDAPSGTSLEIGEVLAKTFNK
EECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHH
ELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCEEEEC
GGCQAALFLRDKKPGIYSMKDVLGL
CCCEEEEEEECCCCCCCCHHHHHCC
>Mature Secondary Structure
MKIIVIGPRGKMGSLVTKSCYNNENIELVAAVAPKGRDYIGQDLGIVANLGKNIDCKVVD
CEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHCCCHHHHHHCCCCCCEEECC
NLDNVIDKCDCIIDFTDPETSMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPVV
CHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
LAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKKDAPSGTSLEIGEVLAKTFNK
EECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHH
ELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCEEEEC
GGCQAALFLRDKKPGIYSMKDVLGL
CCCEEEEEEECCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA