Click here to switch to the map view.

The map label for this gene is ydeE [H]

Identifier: 226948068

GI number: 226948068

Start: 987134

End: 987991

Strand: Direct

Name: ydeE [H]

Synonym: CLM_0929

Alternate gene names: 226948068

Gene position: 987134-987991 (Clockwise)

Preceding gene: 226948067

Following gene: 226948069

Centisome position: 23.76

GC content: 37.06

Gene sequence:

>858_bases
ATGAGGTGGATTGAAGGAATCGGTGAAGCTATCAACTATATTGAGGAGAATATCACTGAAGAAATACCAATAGAAAATAT
TGCAAAAAAAGCATTTGTGTCGACCTTCTATTTCCAAAAAGGCTTTGCAATGCTTTGTGATCTTACGGTTGGAGAGTACA
TCAGACAACGCAGGCTTACCCTTGCCGGCAGTGAGCTTGTTTCCACTGATGAAAAAATCATCGATATTGCACTGAAATAT
GGCTACGCCTCACCGGATAGTTTCACAAAAGCTTTTACTCGATTTCATGGTGTCACACCTACTGCTGTTCGAAAAGATGG
AGCAATGATTAAATCCTTTGCTCCGTTGAAAATCAAATTTTCATTGGAAGGTGGTTATATTATGGATTACAAAATTGTTG
AAAAAGATTCGTTTACTGTCATGGGTGTATCAAAGGTGTTTAAATATGATAGTGCAACTACAAAAGTTCCACAGTTTTGG
ACAGAGCATTATGAAACAGGAAAGGGAAAATTTGTATGCGGAATGTACGGAGTAAACATAGACGAGAGCATGGGATCAGA
TGAGTTTGAATATTTGATTGCAGACAATTATAATCCGTCTATAGAAATACCTAATGGTTTTGTTACAAAGATTATTCCTA
AATACACATGGGCTGTTTTTGCTTGCAAGGGCGCAATGCCGAAATCTATGATAGATGTGAGCAGAAAAATCTTCTCAGAA
TGGCTGCCTAATTGCAAGGATTATGAAATTGCAGCAGGCTACAATATTGAAATGTATACCAATACGGCTGATTATCCGCA
AGGTAATCAAGATGAAAACTACTACAGCGAAATTTGGATTCCTGTTAAGAAAAAATAA

Upstream 100 bases:

>100_bases
TTATCTAGTAATCTTTTAGAAAAGACAAAACATAACACAAAAAGTCGGTAACAACCGCTTGAAAAGAGATAAGATATAGA
TACAGATAGGGGTGATCATT

Downstream 100 bases:

>100_bases
CTACATAAAAGGTCATAATTTGGAGTCCATCAAATTCCAATTTCTCCTAAAGGATAACGGCTTCTAAGGAGTAAAACTCC
TAAGAATTTTGTTAATAAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MRWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFSLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPQFW
TEHYETGKGKFVCGMYGVNIDESMGSDEFEYLIADNYNPSIEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK

Sequences:

>Translated_285_residues
MRWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFSLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPQFW
TEHYETGKGKFVCGMYGVNIDESMGSDEFEYLIADNYNPSIEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK
>Mature_285_residues
MRWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFSLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPQFW
TEHYETGKGKFVCGMYGVNIDESMGSDEFEYLIADNYNPSIEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=40.8163265306122, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790857, Length=294, Percent_Identity=22.4489795918367, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32525; Mature: 32525

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLT
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LAGSELVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKF
HCCCHHHCCCHHHEEEHHCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCEECCCCEEEEE
SLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPQFWTEHYETGKGKFVCGMYGVNI
EECCCEEEEEEEEECCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
DESMGSDEFEYLIADNYNPSIEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
HHCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK
HCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MRWIEGIGEAINYIEENITEEIPIENIAKKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLT
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LAGSELVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKF
HCCCHHHCCCHHHEEEHHCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCEECCCCEEEEE
SLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPQFWTEHYETGKGKFVCGMYGVNI
EECCCEEEEEEEEECCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
DESMGSDEFEYLIADNYNPSIEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
HHCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK
HCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]