Click here to switch to the map view.

The map label for this gene is 226948021

Identifier: 226948021

GI number: 226948021

Start: 941059

End: 941598

Strand: Direct

Name: 226948021

Synonym: CLM_0882

Alternate gene names: NA

Gene position: 941059-941598 (Clockwise)

Preceding gene: 226948020

Following gene: 226948022

Centisome position: 22.65

GC content: 25.74

Gene sequence:

>540_bases
ATGTATAATTTACTTAAAAAATATAGAAATGGTGATATGGGTTCTTTAAATGAAATTATAGAAAATTTTAATCCACTTAT
ATTGAAAGAGGCCTCAAGATGGAGAATAGGATGTTATGAGTATGAAGATTTGGTGCAGCATGGTTACCTTTCAGTTATAA
AAGCTGTTAATATTTTTAAAGGTGAAGAAAGTAAGTTTGTTCCCTATTGTATAAATGCAATTAAAACAAATTATAAAGCT
CTCTTAAAAGGAGAGATAAAGCACCATAGAGAAATACCAGATGAAAATATATTAAATAAAGGCAATGAATATATGTTTAC
CATAGAGGATGAAATAATAGCTTATGAAAAAACAAAGGAGATATATGAAGCATTAGATAAGCTTACACAAGAGGAAAAAC
AGGTTATAAATGATTTTTATATTAAAAATAATAGTCTTAATAAAATAGCAGAGGATACAAATAAAACTTATAATTCAGTA
AGATATACTAAAGATAAAGCAATAAAAAAACTGCAGAAAATACTTGAAGAGCATAGTTAA

Upstream 100 bases:

>100_bases
GGATAGATGGAATGATTTTGAACAAAGGGAATATGATTTTGAAAAGTTAGAAAGAAAGTTATTAGGCTGGGAAATGGCTT
AAAAAAAAGGGGGTTTTTTT

Downstream 100 bases:

>100_bases
GGATAGAGTACAGAGTAGAGAGTACAGAGTATAGAGGGCATAAGAATTAGATTGGGTGGCTAGAATTAAGATATATTATT
TTAATTCTGGAGGATTATGA

Product: sigma-70 family RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor Family; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma Factor RpoE-Like Protein

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MYNLLKKYRNGDMGSLNEIIENFNPLILKEASRWRIGCYEYEDLVQHGYLSVIKAVNIFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSV
RYTKDKAIKKLQKILEEHS

Sequences:

>Translated_179_residues
MYNLLKKYRNGDMGSLNEIIENFNPLILKEASRWRIGCYEYEDLVQHGYLSVIKAVNIFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSV
RYTKDKAIKKLQKILEEHS
>Mature_179_residues
MYNLLKKYRNGDMGSLNEIIENFNPLILKEASRWRIGCYEYEDLVQHGYLSVIKAVNIFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSV
RYTKDKAIKKLQKILEEHS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21155; Mature: 21155

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNLLKKYRNGDMGSLNEIIENFNPLILKEASRWRIGCYEYEDLVQHGYLSVIKAVNIFK
CCHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHC
GEESKFVPYCINAIKTNYKALLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEHHHHHHHHHHHH
IYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSVRYTKDKAIKKLQKILEEHS
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYNLLKKYRNGDMGSLNEIIENFNPLILKEASRWRIGCYEYEDLVQHGYLSVIKAVNIFK
CCHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHC
GEESKFVPYCINAIKTNYKALLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEHHHHHHHHHHHH
IYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSVRYTKDKAIKKLQKILEEHS
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA