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The map label for this gene is ydcN [H]

Identifier: 226947977

GI number: 226947977

Start: 898017

End: 898565

Strand: Direct

Name: ydcN [H]

Synonym: CLM_0838

Alternate gene names: 226947977

Gene position: 898017-898565 (Clockwise)

Preceding gene: 226947975

Following gene: 226947978

Centisome position: 21.61

GC content: 38.25

Gene sequence:

>549_bases
ATGAACTTGAATGATATAATTTCAGCAAATTTAAAGAAGTTAAGAACAGATCGCAATCTTAGTCTAGGTCAGTTATCCGA
GTTATCCGGTGTTAGTAAGGTAATGCTCTCTCAGATAGAGAAAGGAGAATCCAACCCAACCATCAACACAATTTGGAAGA
TTGCCAACGGACTACAGGTCACATATACCAAGCTGATTGACTCGCCAATGGAGGATGCCGTTGTCATCCACAAAGTCCAC
ACAAAGAAGCAATCCGAGAATACGAATTCTTTTATCTCATACTGTTACTATACCACCAATCCCAGCCGTAATTTTGAACT
ATTTAAGGTTGAGGTAAAGCCACATTGTGAGTATAACTCTGATGGCCACGCTCCTAAAACTCAAGAATATATTCTTGTGG
ATCGAGGTGAATTGACGATTCAGCTGGCTACAGGAAAATATGTGCTTAAGGAAGGAGACTCTATCCACTTTGACTGCTAT
CTCCCACATATTTTTATCAATCATCTGGATACGATGCTTGAATTTACAGATATTATTTATTACTTATAA

Upstream 100 bases:

>100_bases
CAATGGCAATACGGTAAAATATATTTTACAACTATTCGTTTTATTGAACGTTAGTTATATTTTACGATTGTACTATATAT
TTGTCAATAGGAGGATTACT

Downstream 100 bases:

>100_bases
AAATTCTGTGAATATAAAAATAGGTGAAATTAAATAGTTACATTCATTGTATAAATGAATCCAGTTGGTATTTTATCTTG
TAAAAGACTTGAGTGATGTG

Product: cupin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNLNDIISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLIDSPMEDAVVIHKVH
TKKQSENTNSFISYCYYTTNPSRNFELFKVEVKPHCEYNSDGHAPKTQEYILVDRGELTIQLATGKYVLKEGDSIHFDCY
LPHIFINHLDTMLEFTDIIYYL

Sequences:

>Translated_182_residues
MNLNDIISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLIDSPMEDAVVIHKVH
TKKQSENTNSFISYCYYTTNPSRNFELFKVEVKPHCEYNSDGHAPKTQEYILVDRGELTIQLATGKYVLKEGDSIHFDCY
LPHIFINHLDTMLEFTDIIYYL
>Mature_182_residues
MNLNDIISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKLIDSPMEDAVVIHKVH
TKKQSENTNSFISYCYYTTNPSRNFELFKVEVKPHCEYNSDGHAPKTQEYILVDRGELTIQLATGKYVLKEGDSIHFDCY
LPHIFINHLDTMLEFTDIIYYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=180, Percent_Identity=31.6666666666667, Blast_Score=98, Evalue=3e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20866; Mature: 20866

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNDIISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEE
TYTKLIDSPMEDAVVIHKVHTKKQSENTNSFISYCYYTTNPSRNFELFKVEVKPHCEYNS
EEHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCC
DGHAPKTQEYILVDRGELTIQLATGKYVLKEGDSIHFDCYLPHIFINHLDTMLEFTDIIY
CCCCCCCCEEEEEECCEEEEEEECCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
YL
CC
>Mature Secondary Structure
MNLNDIISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEE
TYTKLIDSPMEDAVVIHKVHTKKQSENTNSFISYCYYTTNPSRNFELFKVEVKPHCEYNS
EEHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCC
DGHAPKTQEYILVDRGELTIQLATGKYVLKEGDSIHFDCYLPHIFINHLDTMLEFTDIIY
CCCCCCCCEEEEEECCEEEEEEECCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
YL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]