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The map label for this gene is yvmB [H]

Identifier: 226947970

GI number: 226947970

Start: 891624

End: 892112

Strand: Direct

Name: yvmB [H]

Synonym: CLM_0829

Alternate gene names: 226947970

Gene position: 891624-892112 (Clockwise)

Preceding gene: 226947969

Following gene: 226947971

Centisome position: 21.46

GC content: 33.54

Gene sequence:

>489_bases
TTGAAAAAAGAAGAACAGGTTATGATGGAACTTTGGAACTTATTTAATAAGAGAATGTGGCTTGATGGCTTTAAAATGAA
AGCTAGACTTAAGGGTTACAATCCTTCTGAAGTACATTGTATTGAATACATTGGAGGAAACGAAGATTCCAATGTAACGT
TACTTGCTGAGTCGTTTTATATGACAAGGAGTGCTATCAGTAAACTAACGAAGAAGCTCATACAGAAAGGCCTTATTGAA
AGTTATCGGAAACCAGACAACAAGAAAGAAATTTATTTTAAACTTACGGAGCAAGGAAATGACATTTACAAGGTCCATGA
GGAATTGCACAAAGAGTATCAAGAACGAGATAAAGCTTTATTTGATCAGATAACTGAGGAACAATATAACAGTATGCTTA
GTTTCACAGAAAAGTATAATAAACATTTGGATGCAGAAATAAAAAAACTTGGCGTAGATATTACGTCTGGATGGTGTGAT
AAGCTATAA

Upstream 100 bases:

>100_bases
TCGTACAGCAGACATATATTCATAGGCCATTTAATATTGTTGAATGGTACACAAAATCATATTATAATTATAGTCATACA
AGCAAGCGGAGGGATAGATT

Downstream 100 bases:

>100_bases
TAGTACCATACGTTTATATCGCGTTATAGAATGTCTAATCATTAGGCAAAAGTATTCCAAAAGAAAAACAACAGTATTAA
CAGGCAGCTCAACTCTATAT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKKEEQVMMELWNLFNKRMWLDGFKMKARLKGYNPSEVHCIEYIGGNEDSNVTLLAESFYMTRSAISKLTKKLIQKGLIE
SYRKPDNKKEIYFKLTEQGNDIYKVHEELHKEYQERDKALFDQITEEQYNSMLSFTEKYNKHLDAEIKKLGVDITSGWCD
KL

Sequences:

>Translated_162_residues
MKKEEQVMMELWNLFNKRMWLDGFKMKARLKGYNPSEVHCIEYIGGNEDSNVTLLAESFYMTRSAISKLTKKLIQKGLIE
SYRKPDNKKEIYFKLTEQGNDIYKVHEELHKEYQERDKALFDQITEEQYNSMLSFTEKYNKHLDAEIKKLGVDITSGWCD
KL
>Mature_162_residues
MKKEEQVMMELWNLFNKRMWLDGFKMKARLKGYNPSEVHCIEYIGGNEDSNVTLLAESFYMTRSAISKLTKKLIQKGLIE
SYRKPDNKKEIYFKLTEQGNDIYKVHEELHKEYQERDKALFDQITEEQYNSMLSFTEKYNKHLDAEIKKLGVDITSGWCD
KL

Specific function: Involved in protein secretion [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 19293; Mature: 19293

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEEQVMMELWNLFNKRMWLDGFKMKARLKGYNPSEVHCIEYIGGNEDSNVTLLAESFY
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHEEEEEECCCCCCCEEEEHHHHH
MTRSAISKLTKKLIQKGLIESYRKPDNKKEIYFKLTEQGNDIYKVHEELHKEYQERDKAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
FDQITEEQYNSMLSFTEKYNKHLDAEIKKLGVDITSGWCDKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKEEQVMMELWNLFNKRMWLDGFKMKARLKGYNPSEVHCIEYIGGNEDSNVTLLAESFY
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHEEEEEECCCCCCCEEEEHHHHH
MTRSAISKLTKKLIQKGLIESYRKPDNKKEIYFKLTEQGNDIYKVHEELHKEYQERDKAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
FDQITEEQYNSMLSFTEKYNKHLDAEIKKLGVDITSGWCDKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]