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The map label for this gene is yfiR [H]

Identifier: 226947873

GI number: 226947873

Start: 784645

End: 785262

Strand: Direct

Name: yfiR [H]

Synonym: CLM_0728

Alternate gene names: 226947873

Gene position: 784645-785262 (Clockwise)

Preceding gene: 226947871

Following gene: 226947874

Centisome position: 18.88

GC content: 23.14

Gene sequence:

>618_bases
ATGTCACCAAAAGTAAGTGAAAATTATAAATATGAAAAAAGAAAAGAATTATTAAATTCTGCTAGAAATGTTTTTGTAAA
AAATGGATATTTAAGAACGAGTATGCAAGATATTATGGATGAGGCTAAAATTTCTAGAGGGGCTTTATACTCATATTTTA
AAAATATAGATGATGTATTTTTAGAAGTTCTTAAGTTAGATGATTGTGAAGATATAAAATCACTAGATTTTAGAGGTAAT
GAAAGTATATGGAATCAACTAATTGTATGGATCGAAGATATTTTAGATGATATATGTGAAATAGATAAAACACTAACTTT
TGCAAAAACAGAATTTTTTATAGCGGTAAATTATAAAGCGGATAAAGATAAATTTACCTATATAAAGGATAGACACAATA
GGTTAGAAAAGAAAATTAAAAATATAATTGAAGATGGAATAGAAAGGAAAGAATTTTATCCACAAATGTGTATTAATTCA
ATTGCTATATATTTTATATCATTTTTTGATGGATTAATGTTAAATAGATTTAATTTAGATATGGATAGAGATAAGCTAGA
AAAACAAGTTAATATATTTAAATATTCTCTAGAAAAAATACTTGGGCTAAAAAAATAG

Upstream 100 bases:

>100_bases
ACAAGTAATAAAAATAACGATATATTAAATAATAACATAAAAACGACAGTGGTGTATAGTTAAACATATAATTAAGAAAT
TTAAATAAGGAGAAGAGTAG

Downstream 100 bases:

>100_bases
AAGTTTTATCATAAAAATTTAGATTCTGTTAAGTAATTATAAAAAATTATTTATAACAATGGCAAAATTATAAGCTTAAT
CCTTATAAAGGGGGAATTTA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSPKVSENYKYEKRKELLNSARNVFVKNGYLRTSMQDIMDEAKISRGALYSYFKNIDDVFLEVLKLDDCEDIKSLDFRGN
ESIWNQLIVWIEDILDDICEIDKTLTFAKTEFFIAVNYKADKDKFTYIKDRHNRLEKKIKNIIEDGIERKEFYPQMCINS
IAIYFISFFDGLMLNRFNLDMDRDKLEKQVNIFKYSLEKILGLKK

Sequences:

>Translated_205_residues
MSPKVSENYKYEKRKELLNSARNVFVKNGYLRTSMQDIMDEAKISRGALYSYFKNIDDVFLEVLKLDDCEDIKSLDFRGN
ESIWNQLIVWIEDILDDICEIDKTLTFAKTEFFIAVNYKADKDKFTYIKDRHNRLEKKIKNIIEDGIERKEFYPQMCINS
IAIYFISFFDGLMLNRFNLDMDRDKLEKQVNIFKYSLEKILGLKK
>Mature_204_residues
SPKVSENYKYEKRKELLNSARNVFVKNGYLRTSMQDIMDEAKISRGALYSYFKNIDDVFLEVLKLDDCEDIKSLDFRGNE
SIWNQLIVWIEDILDDICEIDKTLTFAKTEFFIAVNYKADKDKFTYIKDRHNRLEKKIKNIIEDGIERKEFYPQMCINSI
AIYFISFFDGLMLNRFNLDMDRDKLEKQVNIFKYSLEKILGLKK

Specific function: Potential Regulator Protein For The Acrab Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24491; Mature: 24359

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKVSENYKYEKRKELLNSARNVFVKNGYLRTSMQDIMDEAKISRGALYSYFKNIDDVF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVLKLDDCEDIKSLDFRGNESIWNQLIVWIEDILDDICEIDKTLTFAKTEFFIAVNYKA
HHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCC
DKDKFTYIKDRHNRLEKKIKNIIEDGIERKEFYPQMCINSIAIYFISFFDGLMLNRFNLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MDRDKLEKQVNIFKYSLEKILGLKK
CCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SPKVSENYKYEKRKELLNSARNVFVKNGYLRTSMQDIMDEAKISRGALYSYFKNIDDVF
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVLKLDDCEDIKSLDFRGNESIWNQLIVWIEDILDDICEIDKTLTFAKTEFFIAVNYKA
HHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCC
DKDKFTYIKDRHNRLEKKIKNIIEDGIERKEFYPQMCINSIAIYFISFFDGLMLNRFNLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MDRDKLEKQVNIFKYSLEKILGLKK
CCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]