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The map label for this gene is ydeE [H]

Identifier: 226947854

GI number: 226947854

Start: 764161

End: 765048

Strand: Direct

Name: ydeE [H]

Synonym: CLM_0709

Alternate gene names: 226947854

Gene position: 764161-765048 (Clockwise)

Preceding gene: 226947853

Following gene: 226947856

Centisome position: 18.39

GC content: 27.36

Gene sequence:

>888_bases
TTGAATTATAGTAATGCAATATCGGAGTGCATTGAATTTATTGAGGAAAATATAAAAAGTGACTTAACACCAGAAGTAAT
AGCAAATAAATGTGGATATTCTGTTTTTCATTTTTCAAGAATATTTAATATTAATAAAGGAATAACTTTAATGGAATATG
TAAAAAAGAGAAGACTTTCATTAGCAGCTATTGACTTGTTTAAAGGCGGTAGAATAATAGATATTGCACTTGATTATGGT
TTTGAAACACATAATGGTTTTTCAAAAGCATTTAAAAAGGAATTTGGATTTAGTCCTAAGCAATATATAAAATGTATGGG
AAATTATTTTAATGAAAAATTAAATATAGATTTTGGAGGTTGTATTATGAAGCCTGTTATTATAAAAAAATCTGCATTCA
AAGTCGCAGGTTATGGAATTAAAACTAATATTACAAACAGTAATTATACTAAAGATATAGCTTCATTTTGGAGTAATTAT
AATGGTGAAAATCTAGAAAGTAAAATGTATAAAATATTAAATCCACCAAAGCATGGTGAAGTGGGATTATGTGTTCCAGC
TAATGGAGAAAGTGGGGATGCAGTATATTTACTTGGGGTTATAGTTGATAACTTCGATAATGTCACTAATGAAATGATAA
CAGTTGAAGTTCCAGAAGCAACTTATGCTGTTTTTACAACACCTCCAGTAGATACATCTAATGATTTAGATAATGATGAT
TTTCCAGAGGCAATAAAAAAGATTTGGAAATATATATTTGAGGAATGGTTTAAAGATAGTGAATATGTTTTTGATGAAAG
TAAATTTGACTTTGAATTTTATGATGAGAGATGTCATGGACGAAAAGATACTGTAATGGAAATTTATGTACCAATAGAAA
AAAAGTAA

Upstream 100 bases:

>100_bases
GTTTTTTATTTAATCAAATAGTTTTAGCAATTTAGGAACAACAGTATTTTAATTATAATGATATATTAGAATTACCACGG
GGAAAAAGGTTGGTGATAAT

Downstream 100 bases:

>100_bases
TTTATTATATATAAGATATCTAAGGTTTAGTTCCCATACTCTTTGGAGCTAAACCTTTTAAATTTTTCTGTAGTCTTTTC
TTATCATAAAATCCTATATA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNYSNAISECIEFIEENIKSDLTPEVIANKCGYSVFHFSRIFNINKGITLMEYVKKRRLSLAAIDLFKGGRIIDIALDYG
FETHNGFSKAFKKEFGFSPKQYIKCMGNYFNEKLNIDFGGCIMKPVIIKKSAFKVAGYGIKTNITNSNYTKDIASFWSNY
NGENLESKMYKILNPPKHGEVGLCVPANGESGDAVYLLGVIVDNFDNVTNEMITVEVPEATYAVFTTPPVDTSNDLDNDD
FPEAIKKIWKYIFEEWFKDSEYVFDESKFDFEFYDERCHGRKDTVMEIYVPIEKK

Sequences:

>Translated_295_residues
MNYSNAISECIEFIEENIKSDLTPEVIANKCGYSVFHFSRIFNINKGITLMEYVKKRRLSLAAIDLFKGGRIIDIALDYG
FETHNGFSKAFKKEFGFSPKQYIKCMGNYFNEKLNIDFGGCIMKPVIIKKSAFKVAGYGIKTNITNSNYTKDIASFWSNY
NGENLESKMYKILNPPKHGEVGLCVPANGESGDAVYLLGVIVDNFDNVTNEMITVEVPEATYAVFTTPPVDTSNDLDNDD
FPEAIKKIWKYIFEEWFKDSEYVFDESKFDFEFYDERCHGRKDTVMEIYVPIEKK
>Mature_295_residues
MNYSNAISECIEFIEENIKSDLTPEVIANKCGYSVFHFSRIFNINKGITLMEYVKKRRLSLAAIDLFKGGRIIDIALDYG
FETHNGFSKAFKKEFGFSPKQYIKCMGNYFNEKLNIDFGGCIMKPVIIKKSAFKVAGYGIKTNITNSNYTKDIASFWSNY
NGENLESKMYKILNPPKHGEVGLCVPANGESGDAVYLLGVIVDNFDNVTNEMITVEVPEATYAVFTTPPVDTSNDLDNDD
FPEAIKKIWKYIFEEWFKDSEYVFDESKFDFEFYDERCHGRKDTVMEIYVPIEKK

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=36.8932038834951, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790857, Length=105, Percent_Identity=34.2857142857143, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33846; Mature: 33846

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSNAISECIEFIEENIKSDLTPEVIANKCGYSVFHFSRIFNINKGITLMEYVKKRRLS
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LAAIDLFKGGRIIDIALDYGFETHNGFSKAFKKEFGFSPKQYIKCMGNYFNEKLNIDFGG
HHEEHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEECCEECC
CIMKPVIIKKSAFKVAGYGIKTNITNSNYTKDIASFWSNYNGENLESKMYKILNPPKHGE
HHHHHHHHCCCCCEEECCCEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
VGLCVPANGESGDAVYLLGVIVDNFDNVTNEMITVEVPEATYAVFTTPPVDTSNDLDNDD
EEEEEECCCCCCCEEEEEEHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCCCCC
FPEAIKKIWKYIFEEWFKDSEYVFDESKFDFEFYDERCHGRKDTVMEIYVPIEKK
HHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MNYSNAISECIEFIEENIKSDLTPEVIANKCGYSVFHFSRIFNINKGITLMEYVKKRRLS
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LAAIDLFKGGRIIDIALDYGFETHNGFSKAFKKEFGFSPKQYIKCMGNYFNEKLNIDFGG
HHEEHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEECCEECC
CIMKPVIIKKSAFKVAGYGIKTNITNSNYTKDIASFWSNYNGENLESKMYKILNPPKHGE
HHHHHHHHCCCCCEEECCCEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
VGLCVPANGESGDAVYLLGVIVDNFDNVTNEMITVEVPEATYAVFTTPPVDTSNDLDNDD
EEEEEECCCCCCCEEEEEEHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCCCCC
FPEAIKKIWKYIFEEWFKDSEYVFDESKFDFEFYDERCHGRKDTVMEIYVPIEKK
HHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]