Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 226947805

GI number: 226947805

Start: 711322

End: 712980

Strand: Reverse

Name: ydiF [H]

Synonym: CLM_0655

Alternate gene names: 226947805

Gene position: 712980-711322 (Counterclockwise)

Preceding gene: 226947808

Following gene: 226947796

Centisome position: 17.16

GC content: 24.95

Gene sequence:

>1659_bases
ATGGTATCAATAAAATTAGATAAAGTAAAAAAATATTATGAAGATAAATTAATTTTAGATATAGACAATTTAGAAATAAA
AGAAAATAGCAGAATCGGAATTGTTGGAGAAAATGGAGCTGGTAAAACAACTCTTATTAAAGTTATTTTAGGTGAACTAG
ATATTGATGAGGGAAAAGTATTTTTTCATGCTAATTATTCATATATAAGCCAAAGTGAAAATTATGCTGGCTCCTGCGAT
GATGGCAGAATCAAGAGTATATTAGGTGCACCAGATAATTATAATGAATTTTTATCCGGTGGAGAAAAGGTGAAAATTAG
TATTAATCAAGCTCTTAGTTCTAATAGCAACTTTCTTATAGCAGATGAGCCAACAGCTAATCTTGACACTAATACTATAA
AAAGCATTGAAAAACTTATAAGTGAATATAAAGGAGGACTTTTATTAGTTTCTCATGATAGAGATTTTTTAAATAATCTT
TGTGATAATATACTAGAAATAGAAAATGGAAAAGTTAAATTATATAAGTGTGGTTATTCAAAATACACTATGCTAAAAGC
TAAAGAAAGAGAAGTAGAAAGAAGAGAATATGAAAAGTATATAGCTGAAAAAAAGCGACTTGAAAAAGCTATGATAATAA
AAGAAAATCAACAGAATTCTATTAAAAAAGCACCTAAAAGAATGGGAAATTCAGAAGCAAGACTTCATAAAATGGGAGAT
CAGAACTCAAAAAAATACTTAGATGGAAATATAAAAGCTTTAAAAAGTAGAATTAATCATCTTGAAGTGAAAGAAAAGCC
TACTTCTAGCAAAGATATTAAGATAAAAATTACTGAAGGTAATAAAATTCCTTCCAAGACAGTAATAGAAGTAAAAAATT
TAGATTTATATATAGGTAATAAACTTCTTATAAAAGATGCAAATTTTAGAATAAAAAACGGTAAAAAGGCAGCTATTATT
GGTGAAAATGGCTGTGGTAAAACAACTTTAATAAAAGAAATATTAAGAAGAGATACAGAAAACATTAGATTATCAAAGTA
TATTTCTATAGGATACTTTGATCAAGATCAAGATATTTTAGATAAAAACAAAACAATATTAGATAATATAAAATCAACTA
GTTCTTATGATGAAAGCTTTATTAGAATACAATTAGCTGGATTTGGGTTTAAGGGGGATACTATATATAAAAATGTTTCT
ATATTAAGTGGAGGCGAAAAGGTTAAAGTTGCACTTTCCAAAATAATTTTAAGTGATACTAATACTTTAATTTTAGATGA
ACCTACCAACTATTTAGATATAAAATCTATTGAAGCTTTAGAAAAGGCACTTATTAATACAGACAAAACAATTGTAATGA
TATCTCACGATAGATCTTTTATTTCTAGTATATGTGATTACATAATTGAAATAAAAGATACTAAGCTAAACTGTTTTTCA
GGTACTTATACTGATTTCATTGAAGAAAAGGTAAATTATGAAACTAAAAAACATGAAAGCCATATTGAGCATGAAAAAAA
AGGAAAATTATTAATCTTAGAAAATAGACTTTCAAAAATAATTTCAGAAATATCTTTAGAAAAAAATTTGATAATTAAAG
AGAAGTTAAATGAAGAATATATTAAATTATTAAATGACATTAAATTATTAAAAAAGTAA

Upstream 100 bases:

>100_bases
GTACTTAAAACTTGAGAGAGTAAATTATTCTAGGGGATACTTATACCTTTTTACGGAATTATTATATACTCTCTCCTAAA
TTTAAGGAGGGATTTTTTTT

Downstream 100 bases:

>100_bases
CCAAATTCCTATGGTAAAAAAGAGTGCATCTTAAAATAGATTTAATTTTAATATATCAAATAGAAAAAAATATATGTAAT
AAACATATGAATAAGCTTTA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MVSIKLDKVKKYYEDKLILDIDNLEIKENSRIGIVGENGAGKTTLIKVILGELDIDEGKVFFHANYSYISQSENYAGSCD
DGRIKSILGAPDNYNEFLSGGEKVKISINQALSSNSNFLIADEPTANLDTNTIKSIEKLISEYKGGLLLVSHDRDFLNNL
CDNILEIENGKVKLYKCGYSKYTMLKAKEREVERREYEKYIAEKKRLEKAMIIKENQQNSIKKAPKRMGNSEARLHKMGD
QNSKKYLDGNIKALKSRINHLEVKEKPTSSKDIKIKITEGNKIPSKTVIEVKNLDLYIGNKLLIKDANFRIKNGKKAAII
GENGCGKTTLIKEILRRDTENIRLSKYISIGYFDQDQDILDKNKTILDNIKSTSSYDESFIRIQLAGFGFKGDTIYKNVS
ILSGGEKVKVALSKIILSDTNTLILDEPTNYLDIKSIEALEKALINTDKTIVMISHDRSFISSICDYIIEIKDTKLNCFS
GTYTDFIEEKVNYETKKHESHIEHEKKGKLLILENRLSKIISEISLEKNLIIKEKLNEEYIKLLNDIKLLKK

Sequences:

>Translated_552_residues
MVSIKLDKVKKYYEDKLILDIDNLEIKENSRIGIVGENGAGKTTLIKVILGELDIDEGKVFFHANYSYISQSENYAGSCD
DGRIKSILGAPDNYNEFLSGGEKVKISINQALSSNSNFLIADEPTANLDTNTIKSIEKLISEYKGGLLLVSHDRDFLNNL
CDNILEIENGKVKLYKCGYSKYTMLKAKEREVERREYEKYIAEKKRLEKAMIIKENQQNSIKKAPKRMGNSEARLHKMGD
QNSKKYLDGNIKALKSRINHLEVKEKPTSSKDIKIKITEGNKIPSKTVIEVKNLDLYIGNKLLIKDANFRIKNGKKAAII
GENGCGKTTLIKEILRRDTENIRLSKYISIGYFDQDQDILDKNKTILDNIKSTSSYDESFIRIQLAGFGFKGDTIYKNVS
ILSGGEKVKVALSKIILSDTNTLILDEPTNYLDIKSIEALEKALINTDKTIVMISHDRSFISSICDYIIEIKDTKLNCFS
GTYTDFIEEKVNYETKKHESHIEHEKKGKLLILENRLSKIISEISLEKNLIIKEKLNEEYIKLLNDIKLLKK
>Mature_552_residues
MVSIKLDKVKKYYEDKLILDIDNLEIKENSRIGIVGENGAGKTTLIKVILGELDIDEGKVFFHANYSYISQSENYAGSCD
DGRIKSILGAPDNYNEFLSGGEKVKISINQALSSNSNFLIADEPTANLDTNTIKSIEKLISEYKGGLLLVSHDRDFLNNL
CDNILEIENGKVKLYKCGYSKYTMLKAKEREVERREYEKYIAEKKRLEKAMIIKENQQNSIKKAPKRMGNSEARLHKMGD
QNSKKYLDGNIKALKSRINHLEVKEKPTSSKDIKIKITEGNKIPSKTVIEVKNLDLYIGNKLLIKDANFRIKNGKKAAII
GENGCGKTTLIKEILRRDTENIRLSKYISIGYFDQDQDILDKNKTILDNIKSTSSYDESFIRIQLAGFGFKGDTIYKNVS
ILSGGEKVKVALSKIILSDTNTLILDEPTNYLDIKSIEALEKALINTDKTIVMISHDRSFISSICDYIIEIKDTKLNCFS
GTYTDFIEEKVNYETKKHESHIEHEKKGKLLILENRLSKIISEISLEKNLIIKEKLNEEYIKLLNDIKLLKK

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=383, Percent_Identity=27.4151436031332, Blast_Score=149, Evalue=1e-35,
Organism=Homo sapiens, GI27881506, Length=396, Percent_Identity=27.2727272727273, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI10947137, Length=396, Percent_Identity=27.2727272727273, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI10947135, Length=402, Percent_Identity=24.3781094527363, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI69354671, Length=402, Percent_Identity=24.3781094527363, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI110832835, Length=242, Percent_Identity=24.3801652892562, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI110832837, Length=242, Percent_Identity=24.3801652892562, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1789751, Length=533, Percent_Identity=27.0168855534709, Blast_Score=195, Evalue=5e-51,
Organism=Escherichia coli, GI1787041, Length=430, Percent_Identity=29.3023255813954, Blast_Score=195, Evalue=5e-51,
Organism=Escherichia coli, GI2367384, Length=541, Percent_Identity=28.4658040665434, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1787182, Length=412, Percent_Identity=28.3980582524272, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI87081782, Length=571, Percent_Identity=23.4676007005254, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788165, Length=255, Percent_Identity=24.7058823529412, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786398, Length=218, Percent_Identity=26.1467889908257, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787143, Length=249, Percent_Identity=26.9076305220884, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081709, Length=209, Percent_Identity=23.444976076555, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=402, Percent_Identity=27.1144278606965, Blast_Score=156, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17553372, Length=399, Percent_Identity=28.5714285714286, Blast_Score=149, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17555318, Length=387, Percent_Identity=26.0981912144703, Blast_Score=125, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17567265, Length=243, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=413, Percent_Identity=30.0242130750605, Blast_Score=178, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6320874, Length=395, Percent_Identity=25.5696202531646, Blast_Score=143, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6323278, Length=194, Percent_Identity=32.4742268041237, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=195, Percent_Identity=32.3076923076923, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6325030, Length=211, Percent_Identity=31.2796208530806, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24666836, Length=528, Percent_Identity=27.2727272727273, Blast_Score=170, Evalue=3e-42,
Organism=Drosophila melanogaster, GI24641342, Length=527, Percent_Identity=26.7552182163188, Blast_Score=155, Evalue=5e-38,
Organism=Drosophila melanogaster, GI24642252, Length=549, Percent_Identity=23.8615664845173, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI18859989, Length=549, Percent_Identity=23.8615664845173, Blast_Score=140, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 62814; Mature: 62814

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIKLDKVKKYYEDKLILDIDNLEIKENSRIGIVGENGAGKTTLIKVILGELDIDEGKV
CCEEEHHHHHHHHCCEEEEEECCEEEECCCEEEEEECCCCCHHHHHEEHHHHCCCCCCEE
FFHANYSYISQSENYAGSCDDGRIKSILGAPDNYNEFLSGGEKVKISINQALSSNSNFLI
EEEECCCEECCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCCEEEEEEEHHHCCCCCEEE
ADEPTANLDTNTIKSIEKLISEYKGGLLLVSHDRDFLNNLCDNILEIENGKVKLYKCGYS
ECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEEECCCEEEEEEECCC
KYTMLKAKEREVERREYEKYIAEKKRLEKAMIIKENQQNSIKKAPKRMGNSEARLHKMGD
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCHHHHHHCCC
QNSKKYLDGNIKALKSRINHLEVKEKPTSSKDIKIKITEGNKIPSKTVIEVKNLDLYIGN
CCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEEECC
KLLIKDANFRIKNGKKAAIIGENGCGKTTLIKEILRRDTENIRLSKYISIGYFDQDQDIL
EEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEECCCHHHH
DKNKTILDNIKSTSSYDESFIRIQLAGFGFKGDTIYKNVSILSGGEKVKVALSKIILSDT
HCCCHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCC
NTLILDEPTNYLDIKSIEALEKALINTDKTIVMISHDRSFISSICDYIIEIKDTKLNCFS
CEEEEECCCCEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEEECCEEEEEC
GTYTDFIEEKVNYETKKHESHIEHEKKGKLLILENRLSKIISEISLEKNLIIKEKLNEEY
CCHHHHHHHHHCCCHHHHHHHCCHHHCCCEEEEHHHHHHHHHHHHHCCCEEEHHHCCHHH
IKLLNDIKLLKK
HHHHHHHHHHCC
>Mature Secondary Structure
MVSIKLDKVKKYYEDKLILDIDNLEIKENSRIGIVGENGAGKTTLIKVILGELDIDEGKV
CCEEEHHHHHHHHCCEEEEEECCEEEECCCEEEEEECCCCCHHHHHEEHHHHCCCCCCEE
FFHANYSYISQSENYAGSCDDGRIKSILGAPDNYNEFLSGGEKVKISINQALSSNSNFLI
EEEECCCEECCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCCEEEEEEEHHHCCCCCEEE
ADEPTANLDTNTIKSIEKLISEYKGGLLLVSHDRDFLNNLCDNILEIENGKVKLYKCGYS
ECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEEECCCEEEEEEECCC
KYTMLKAKEREVERREYEKYIAEKKRLEKAMIIKENQQNSIKKAPKRMGNSEARLHKMGD
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCHHHHHHCCC
QNSKKYLDGNIKALKSRINHLEVKEKPTSSKDIKIKITEGNKIPSKTVIEVKNLDLYIGN
CCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEEECC
KLLIKDANFRIKNGKKAAIIGENGCGKTTLIKEILRRDTENIRLSKYISIGYFDQDQDIL
EEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEECCCHHHH
DKNKTILDNIKSTSSYDESFIRIQLAGFGFKGDTIYKNVSILSGGEKVKVALSKIILSDT
HCCCHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCC
NTLILDEPTNYLDIKSIEALEKALINTDKTIVMISHDRSFISSICDYIIEIKDTKLNCFS
CEEEEECCCCEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEEECCEEEEEC
GTYTDFIEEKVNYETKKHESHIEHEKKGKLLILENRLSKIISEISLEKNLIIKEKLNEEY
CCHHHHHHHHHCCCHHHHHHHCCHHHCCCEEEEHHHHHHHHHHHHHCCCEEEHHHCCHHH
IKLLNDIKLLKK
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]