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The map label for this gene is icd [H]

Identifier: 226947655

GI number: 226947655

Start: 539818

End: 540816

Strand: Direct

Name: icd [H]

Synonym: CLM_0498

Alternate gene names: 226947655

Gene position: 539818-540816 (Clockwise)

Preceding gene: 226947654

Following gene: 226947656

Centisome position: 12.99

GC content: 32.43

Gene sequence:

>999_bases
ATGAAGTATGATATAACATTAATACCGGGAGATGGTATAGGACCAGAAGTAACTGAAGCTGCAAGGAAAGTTATAGATGC
AGTAGGAGCAGATATTAATTGGCATGTAGTAGAGGCGGGGGAAAAAGTTTTAGACAAATATAAAACCCCCCTTCCAGACT
ATGTTTTAGATAGTATAAAGGAGACTAAAGTAGCATTGAAGGGTCCAGTAACTACTCCTGTAGGAAAGGGATTTAGAAGT
GTTAATGTTACTTTAAGAAAAAGCTTAAATTTATATGCAAATATAAGACCTGTAAAGAGTTATAAAGGAATAAAATCTAG
ATATGAAAATGTGGATTTAATAATTGTACGGGAAAATACAGAAGATTTATATGCGGGAATTGAACATATGATAGGTGATG
ATATAGCAGAAAGTATAAAGGTAATTACCAAAAAGGCTAGTGATAGAATAGTAGATTATGCTTTTGATATGGCAAGAAAA
GAAAATAGAAATAAGGTAACTGCAGTGCATAAAGCTAACATAATGAAATTATCAGATGGATTATTTTTAAATTGTGCAAA
GGAAGTTGCTAGTAAAAATAAGGATATTGATTTTGAAGATGTAATAGTAGATGCTATGGCCATGAAATTAGTTTTAAATC
CAGAAAAATATGATGTTCTAGTAATGCCTAATTTATATGGTGATATTTTATCAGACATGGCAGCAGGTTTAGTTGGGGGA
TTAGGATTACTTCCAGGAGCTAATATAGGATATGAGGGAGCTGTGTTTGAAGCAGCCCATGGTGCAGCACCTGATATTGC
AGGAAAAAATAAAGCTAATCCAACAGCTTGTATATTAAGTGGTGCCATGATGCTAAACTATATTGGTGAAAATGAAAAAG
CTAAAAAAATAGAAAATGCTATAGAAAAAGTATTTGTAGAAGGAAAATACCTTACAGAAGATTTAGGCGGAAGTTCTACA
ACAGAAGAATTTACAAAGGCAATTATAGAGAATCTTTAA

Upstream 100 bases:

>100_bases
AAACCGATAAAATATATTGTGATTATGAATTAAATCGATAATTTATGATTATAGCAGAAAATTGTAGAGTATTTTCCTTG
TAGGTTTTTGGAGGGATAGT

Downstream 100 bases:

>100_bases
ATTACTATATAATTTTTAATTTGCTACTACTTTTCAATTAGATATAAATTTTAGATCTCCTTTTTAAATTACATTCAAGT
TTTTCTTATGATTTTAAGAT

Product: dehydrogenase

Products: NA

Alternate protein names: IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKYDITLIPGDGIGPEVTEAARKVIDAVGADINWHVVEAGEKVLDKYKTPLPDYVLDSIKETKVALKGPVTTPVGKGFRS
VNVTLRKSLNLYANIRPVKSYKGIKSRYENVDLIIVRENTEDLYAGIEHMIGDDIAESIKVITKKASDRIVDYAFDMARK
ENRNKVTAVHKANIMKLSDGLFLNCAKEVASKNKDIDFEDVIVDAMAMKLVLNPEKYDVLVMPNLYGDILSDMAAGLVGG
LGLLPGANIGYEGAVFEAAHGAAPDIAGKNKANPTACILSGAMMLNYIGENEKAKKIENAIEKVFVEGKYLTEDLGGSST
TEEFTKAIIENL

Sequences:

>Translated_332_residues
MKYDITLIPGDGIGPEVTEAARKVIDAVGADINWHVVEAGEKVLDKYKTPLPDYVLDSIKETKVALKGPVTTPVGKGFRS
VNVTLRKSLNLYANIRPVKSYKGIKSRYENVDLIIVRENTEDLYAGIEHMIGDDIAESIKVITKKASDRIVDYAFDMARK
ENRNKVTAVHKANIMKLSDGLFLNCAKEVASKNKDIDFEDVIVDAMAMKLVLNPEKYDVLVMPNLYGDILSDMAAGLVGG
LGLLPGANIGYEGAVFEAAHGAAPDIAGKNKANPTACILSGAMMLNYIGENEKAKKIENAIEKVFVEGKYLTEDLGGSST
TEEFTKAIIENL
>Mature_332_residues
MKYDITLIPGDGIGPEVTEAARKVIDAVGADINWHVVEAGEKVLDKYKTPLPDYVLDSIKETKVALKGPVTTPVGKGFRS
VNVTLRKSLNLYANIRPVKSYKGIKSRYENVDLIIVRENTEDLYAGIEHMIGDDIAESIKVITKKASDRIVDYAFDMARK
ENRNKVTAVHKANIMKLSDGLFLNCAKEVASKNKDIDFEDVIVDAMAMKLVLNPEKYDVLVMPNLYGDILSDMAAGLVGG
LGLLPGANIGYEGAVFEAAHGAAPDIAGKNKANPTACILSGAMMLNYIGENEKAKKIENAIEKVFVEGKYLTEDLGGSST
TEEFTKAIIENL

Specific function: Unknown

COG id: COG0473

COG function: function code CE; Isocitrate/isopropylmalate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isocitrate and isopropylmalate dehydrogenases family [H]

Homologues:

Organism=Homo sapiens, GI5031777, Length=334, Percent_Identity=48.8023952095808, Blast_Score=332, Evalue=3e-91,
Organism=Homo sapiens, GI28178821, Length=341, Percent_Identity=44.8680351906158, Blast_Score=267, Evalue=8e-72,
Organism=Homo sapiens, GI28178816, Length=341, Percent_Identity=44.574780058651, Blast_Score=266, Evalue=2e-71,
Organism=Homo sapiens, GI4758582, Length=334, Percent_Identity=42.2155688622754, Blast_Score=261, Evalue=7e-70,
Organism=Homo sapiens, GI28178838, Length=303, Percent_Identity=43.8943894389439, Blast_Score=250, Evalue=1e-66,
Organism=Homo sapiens, GI28178819, Length=200, Percent_Identity=50.5, Blast_Score=184, Evalue=7e-47,
Organism=Escherichia coli, GI1787381, Length=389, Percent_Identity=38.8174807197943, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI87081683, Length=331, Percent_Identity=35.3474320241692, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1788101, Length=356, Percent_Identity=32.3033707865169, Blast_Score=171, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI71986051, Length=321, Percent_Identity=49.5327102803738, Blast_Score=330, Evalue=4e-91,
Organism=Caenorhabditis elegans, GI25144293, Length=336, Percent_Identity=40.4761904761905, Blast_Score=253, Evalue=1e-67,
Organism=Caenorhabditis elegans, GI17505779, Length=333, Percent_Identity=40.8408408408408, Blast_Score=250, Evalue=7e-67,
Organism=Caenorhabditis elegans, GI17550882, Length=338, Percent_Identity=39.9408284023669, Blast_Score=249, Evalue=2e-66,
Organism=Saccharomyces cerevisiae, GI6324709, Length=335, Percent_Identity=48.0597014925373, Blast_Score=333, Evalue=3e-92,
Organism=Saccharomyces cerevisiae, GI6324291, Length=334, Percent_Identity=45.8083832335329, Blast_Score=293, Evalue=2e-80,
Organism=Saccharomyces cerevisiae, GI6322097, Length=348, Percent_Identity=42.5287356321839, Blast_Score=250, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6319830, Length=358, Percent_Identity=32.6815642458101, Blast_Score=141, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24643270, Length=328, Percent_Identity=53.9634146341463, Blast_Score=367, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24643268, Length=328, Percent_Identity=53.9634146341463, Blast_Score=367, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24661184, Length=334, Percent_Identity=48.502994011976, Blast_Score=336, Evalue=2e-92,
Organism=Drosophila melanogaster, GI281362242, Length=337, Percent_Identity=44.8071216617211, Blast_Score=256, Evalue=1e-68,
Organism=Drosophila melanogaster, GI24648872, Length=337, Percent_Identity=44.8071216617211, Blast_Score=256, Evalue=1e-68,
Organism=Drosophila melanogaster, GI161078633, Length=333, Percent_Identity=39.3393393393393, Blast_Score=240, Evalue=8e-64,
Organism=Drosophila melanogaster, GI24650122, Length=333, Percent_Identity=39.3393393393393, Blast_Score=240, Evalue=8e-64,
Organism=Drosophila melanogaster, GI161078635, Length=333, Percent_Identity=39.3393393393393, Blast_Score=240, Evalue=9e-64,
Organism=Drosophila melanogaster, GI161078637, Length=333, Percent_Identity=39.3393393393393, Blast_Score=240, Evalue=1e-63,
Organism=Drosophila melanogaster, GI161078639, Length=328, Percent_Identity=39.6341463414634, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI20130355, Length=333, Percent_Identity=35.4354354354354, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI45550436, Length=247, Percent_Identity=25.9109311740891, Blast_Score=95, Evalue=7e-20,

Paralogues:

None

Copy number: 8180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019818
- InterPro:   IPR001804 [H]

Pfam domain/function: PF00180 Iso_dh [H]

EC number: =1.1.1.42 [H]

Molecular weight: Translated: 36129; Mature: 36129

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS00470 IDH_IMDH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYDITLIPGDGIGPEVTEAARKVIDAVGADINWHVVEAGEKVLDKYKTPLPDYVLDSIK
CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHH
ETKVALKGPVTTPVGKGFRSVNVTLRKSLNLYANIRPVKSYKGIKSRYENVDLIIVRENT
HHHHEECCCCCCCCCCCCCEEEHHHEECCCEEEECEEHHHHHHHHHHHCCCEEEEEECCC
EDLYAGIEHMIGDDIAESIKVITKKASDRIVDYAFDMARKENRNKVTAVHKANIMKLSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCC
LFLNCAKEVASKNKDIDFEDVIVDAMAMKLVLNPEKYDVLVMPNLYGDILSDMAAGLVGG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHH
LGLLPGANIGYEGAVFEAAHGAAPDIAGKNKANPTACILSGAMMLNYIGENEKAKKIENA
HHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
IEKVFVEGKYLTEDLGGSSTTEEFTKAIIENL
HHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKYDITLIPGDGIGPEVTEAARKVIDAVGADINWHVVEAGEKVLDKYKTPLPDYVLDSIK
CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHH
ETKVALKGPVTTPVGKGFRSVNVTLRKSLNLYANIRPVKSYKGIKSRYENVDLIIVRENT
HHHHEECCCCCCCCCCCCCEEEHHHEECCCEEEECEEHHHHHHHHHHHCCCEEEEEECCC
EDLYAGIEHMIGDDIAESIKVITKKASDRIVDYAFDMARKENRNKVTAVHKANIMKLSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCC
LFLNCAKEVASKNKDIDFEDVIVDAMAMKLVLNPEKYDVLVMPNLYGDILSDMAAGLVGG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHH
LGLLPGANIGYEGAVFEAAHGAAPDIAGKNKANPTACILSGAMMLNYIGENEKAKKIENA
HHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
IEKVFVEGKYLTEDLGGSSTTEEFTKAIIENL
HHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1539996 [H]