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The map label for this gene is 226947638

Identifier: 226947638

GI number: 226947638

Start: 515025

End: 516278

Strand: Direct

Name: 226947638

Synonym: CLM_0475

Alternate gene names: NA

Gene position: 515025-516278 (Clockwise)

Preceding gene: 226947637

Following gene: 226947639

Centisome position: 12.39

GC content: 24.72

Gene sequence:

>1254_bases
ATGGAGATACTTTCTGTAGGGCAAAAAATTAAAAGAGCTAGGGTTTACAAAGGATATACCCTAAAAGAACTATGTGGAGA
TATCATATCTGTATCTAAAATGAGTTGTATAGAAAATGATAAAATAAAGCCAGATGATGAAATACTAAAAATTATATCAG
AAGAGTTAGAAATAGATATTAAGTATTTAAAAGCTGGAGTAAAAGAGCAACTTTTAGATAATATTGATAAGCTTAAAGAT
AACAAAAATTCATCGGATTATGAGAAAATTCTAGAATATAATTTAAAGTATGCAGAAGAATATAAATATTATCACATAGC
ATTTTATATAATGCATATGCTATTTAATTATTATCTAGAAAATAGTGAAATAGAGAAGTTACAGCTTATAATATCTAAGT
ATTATGATTATTGGCTAAAATCTGGTATAGATGACAATAAAATAATTTATTATATGGACATTGCTAAGTTTTTCTTTGAA
ACGAAGGAATATATAGAAGCGGCTAGTTATTATAGGAGTATTAGAAAAATTGCCCATGACAAAAATAATTATATATTGTT
ATCTGAGGCTACATATGATGAAGCGGCTTGTTATATAAAAATAAAAGAATTTGATAAAGCTTATGAAATAGCTGTAAGTC
TTATAGACTTAATAGATTTTTTAGATAATAATATTAAAAAAGCGGAAGTTTATAAAATATTAGCTATTTTATCTTTAAGA
TTAGATAGAAAAAAATTTGAAAATTATGAAGAAAAATCTTATGTATTATATGGGAATGATTTAATTCATAAGGCAGATGC
TACATTTAAATATGCCACGGCTATGTTCGATATAGGCGAAAAGGATAAAGGAATAAGCTATATAAATAAAGCTTTAGATT
TATATCCTAAAAATAATACAAGGGCTTTTGTATCCTTTATGTTAGATACTATGAAAGTTCTATTAAAAAATGATGTATTA
TATAGGGCTCAAGAAATTTCAGACGAAATATTAAATTATGCTATAAAGATAAATAATATAAGATTTATAGAAAAAGCTTA
CTATTATAAAGCTATAATTTTAGAAAAACAAGGAAGTTTAGATACTGCTGAAATGTATATGAATCTTTCTTTAGATTCTA
TACTAAAGTTTGGAACAAAACAGGAAATATATGAAAGATACATGAAGATGGGAAATATGTATCACAAGATGAACCAGGTA
GGAGAGTCTATAAAATATTTTAATTTAGCAATTAAGCTTTCCAAAAAACTTTAG

Upstream 100 bases:

>100_bases
GAAGCGGCTAAATATTTAAATGAAGGTGTAGAAATGTTCAAGGAAGTAGGATTATTAAAAGACATGTAAGTAGATTTATT
TTGTGGATGGGTGAGATTTT

Downstream 100 bases:

>100_bases
TGGATAAGGAAATTATGACTTAAAAGGGTGTTATACTACCCTTAGTTTAAAAAAGGATATGTGGTTAGAAAGACAACTCA
CTTTGATAAGAGATTCTAAT

Product: tetratricopeptide repeat-containing protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; Ferrous Iron Transport Protein B-Like Protein; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MEILSVGQKIKRARVYKGYTLKELCGDIISVSKMSCIENDKIKPDDEILKIISEELEIDIKYLKAGVKEQLLDNIDKLKD
NKNSSDYEKILEYNLKYAEEYKYYHIAFYIMHMLFNYYLENSEIEKLQLIISKYYDYWLKSGIDDNKIIYYMDIAKFFFE
TKEYIEAASYYRSIRKIAHDKNNYILLSEATYDEAACYIKIKEFDKAYEIAVSLIDLIDFLDNNIKKAEVYKILAILSLR
LDRKKFENYEEKSYVLYGNDLIHKADATFKYATAMFDIGEKDKGISYINKALDLYPKNNTRAFVSFMLDTMKVLLKNDVL
YRAQEISDEILNYAIKINNIRFIEKAYYYKAIILEKQGSLDTAEMYMNLSLDSILKFGTKQEIYERYMKMGNMYHKMNQV
GESIKYFNLAIKLSKKL

Sequences:

>Translated_417_residues
MEILSVGQKIKRARVYKGYTLKELCGDIISVSKMSCIENDKIKPDDEILKIISEELEIDIKYLKAGVKEQLLDNIDKLKD
NKNSSDYEKILEYNLKYAEEYKYYHIAFYIMHMLFNYYLENSEIEKLQLIISKYYDYWLKSGIDDNKIIYYMDIAKFFFE
TKEYIEAASYYRSIRKIAHDKNNYILLSEATYDEAACYIKIKEFDKAYEIAVSLIDLIDFLDNNIKKAEVYKILAILSLR
LDRKKFENYEEKSYVLYGNDLIHKADATFKYATAMFDIGEKDKGISYINKALDLYPKNNTRAFVSFMLDTMKVLLKNDVL
YRAQEISDEILNYAIKINNIRFIEKAYYYKAIILEKQGSLDTAEMYMNLSLDSILKFGTKQEIYERYMKMGNMYHKMNQV
GESIKYFNLAIKLSKKL
>Mature_417_residues
MEILSVGQKIKRARVYKGYTLKELCGDIISVSKMSCIENDKIKPDDEILKIISEELEIDIKYLKAGVKEQLLDNIDKLKD
NKNSSDYEKILEYNLKYAEEYKYYHIAFYIMHMLFNYYLENSEIEKLQLIISKYYDYWLKSGIDDNKIIYYMDIAKFFFE
TKEYIEAASYYRSIRKIAHDKNNYILLSEATYDEAACYIKIKEFDKAYEIAVSLIDLIDFLDNNIKKAEVYKILAILSLR
LDRKKFENYEEKSYVLYGNDLIHKADATFKYATAMFDIGEKDKGISYINKALDLYPKNNTRAFVSFMLDTMKVLLKNDVL
YRAQEISDEILNYAIKINNIRFIEKAYYYKAIILEKQGSLDTAEMYMNLSLDSILKFGTKQEIYERYMKMGNMYHKMNQV
GESIKYFNLAIKLSKKL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49438; Mature: 49438

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILSVGQKIKRARVYKGYTLKELCGDIISVSKMSCIENDKIKPDDEILKIISEELEIDI
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KYLKAGVKEQLLDNIDKLKDNKNSSDYEKILEYNLKYAEEYKYYHIAFYIMHMLFNYYLE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
NSEIEKLQLIISKYYDYWLKSGIDDNKIIYYMDIAKFFFETKEYIEAASYYRSIRKIAHD
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNNYILLSEATYDEAACYIKIKEFDKAYEIAVSLIDLIDFLDNNIKKAEVYKILAILSLR
CCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LDRKKFENYEEKSYVLYGNDLIHKADATFKYATAMFDIGEKDKGISYINKALDLYPKNNT
HHHHHHCCCCCCEEEEECCCHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH
RAFVSFMLDTMKVLLKNDVLYRAQEISDEILNYAIKINNIRFIEKAYYYKAIILEKQGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEHHHHHHHEEEEEECCCCC
DTAEMYMNLSLDSILKFGTKQEIYERYMKMGNMYHKMNQVGESIKYFNLAIKLSKKL
CHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MEILSVGQKIKRARVYKGYTLKELCGDIISVSKMSCIENDKIKPDDEILKIISEELEIDI
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KYLKAGVKEQLLDNIDKLKDNKNSSDYEKILEYNLKYAEEYKYYHIAFYIMHMLFNYYLE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
NSEIEKLQLIISKYYDYWLKSGIDDNKIIYYMDIAKFFFETKEYIEAASYYRSIRKIAHD
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNNYILLSEATYDEAACYIKIKEFDKAYEIAVSLIDLIDFLDNNIKKAEVYKILAILSLR
CCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LDRKKFENYEEKSYVLYGNDLIHKADATFKYATAMFDIGEKDKGISYINKALDLYPKNNT
HHHHHHCCCCCCEEEEECCCHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH
RAFVSFMLDTMKVLLKNDVLYRAQEISDEILNYAIKINNIRFIEKAYYYKAIILEKQGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEHHHHHHHEEEEEECCCCC
DTAEMYMNLSLDSILKFGTKQEIYERYMKMGNMYHKMNQVGESIKYFNLAIKLSKKL
CHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA