Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
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Accession | NC_012563 |
Length | 4,155,278 |
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The map label for this gene is pstS [H]
Identifier: 226947617
GI number: 226947617
Start: 493670
End: 494581
Strand: Direct
Name: pstS [H]
Synonym: CLM_0454
Alternate gene names: 226947617
Gene position: 493670-494581 (Clockwise)
Preceding gene: 226947616
Following gene: 226947618
Centisome position: 11.88
GC content: 32.68
Gene sequence:
>912_bases ATGAAAAAAAAGCTTAGTGTAATGTTAAGTGTTTTATTAACATCTGCGTTACTTTTTACTGCCTGTGGAAGCAAACAAAC TTCTAATAGCAATGAAGAATCCTCAAAAAAAGAATCAGGCAAAATAATGTGCATAGGTTCTTCAACTTTAGCTCCAGTAG TTTCTAAAGCAGGAGATACTTTAAAATCTAAACATGGTACATGGAAAAAAATGAATGATAAACTTCCAGATGAAAACATA GAGCTAGCAGTATCTTCAGGTGGTTCTGGAGCAGGGGTAAAGGCTGCTTTAGAAAAAACAGCTAATTTTGGTTTAATATC TAGAGAAGTTAGCAAAGATGAAAAAGCCAAGATGAAAGAATACAATGAAATAAAAATAGGATATGATGCACTAACACTTT CAGTTAATCCTCAAAATCCAATATTAAAAAATAAAAAAGGTCTTACATCACAAGAGATTCAAAAAATATTTTCTGGTGAA GCTAAAACGTGGAAAGATGTAGATACTTCACTTCCAGCTAATAAAATAGTACTTGTAGTTAGAGATGCTGGTGGTGGCGC TGCAGAAGTATTCCAAAAGGCTGTTATGGGAGATAAAAAAGTAAGTAAAGATGCTGTACAAGCACCTTCTATGGGCGCAT TAACTCAAAAGGTTATAGAAAATAAGGATGCTATAGGATATGCTTCAGTAGGCCTTGTAGATCAAAATAAAGGGAAGTTA ACACCAATGGAAGTTGATGGTATAGCTCCAACAAAGGAAAACATAACTAGTGGTAAATATAAAATAGCTAGACCACTTTT ACTTATAAAAGATGGCAAGCTTACAGGAGTAGAACAAACTTTTGTAGATTTCTTAAAATCTGAAGAGGGTTTAAAAATAA TTGATGAATCAGGTTTTGTTTCTATAAAATAA
Upstream 100 bases:
>100_bases TAATATAACTAATGATGTAAATATTATGCTAAAATACTATGTGAGACAGGGATTTAACATATATTAACTTAATAGGTAAT ATTACAAGGGAGGAATATTT
Downstream 100 bases:
>100_bases ATTTAAGTTTTTTCAGAAGTTCTTATTTGTTTTAAACTATGTGTTAATTATATAAGTTATTTTAAGCTTATGATTAACGT GTATACTTTAAAGCAGATTA
Product: phosphate uptake ABC transporter phosphate-binding protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MKKKLSVMLSVLLTSALLFTACGSKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDTLKSKHGTWKKMNDKLPDENI ELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKEYNEIKIGYDALTLSVNPQNPILKNKKGLTSQEIQKIFSGE AKTWKDVDTSLPANKIVLVVRDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFVSIK
Sequences:
>Translated_303_residues MKKKLSVMLSVLLTSALLFTACGSKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDTLKSKHGTWKKMNDKLPDENI ELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKEYNEIKIGYDALTLSVNPQNPILKNKKGLTSQEIQKIFSGE AKTWKDVDTSLPANKIVLVVRDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFVSIK >Mature_303_residues MKKKLSVMLSVLLTSALLFTACGSKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDTLKSKHGTWKKMNDKLPDENI ELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKEYNEIKIGYDALTLSVNPQNPILKNKKGLTSQEIQKIFSGE AKTWKDVDTSLPANKIVLVVRDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFVSIK
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32357; Mature: 32357
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKLSVMLSVLLTSALLFTACGSKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDT CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHCCHH LKSKHGTWKKMNDKLPDENIELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKE HHHCCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHH YNEIKIGYDALTLSVNPQNPILKNKKGLTSQEIQKIFSGEAKTWKDVDTSLPANKIVLVV CCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCEEEEEE RDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL ECCCCCHHHHHHHHHHCCCHHCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCC TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFV CCEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCE SIK EEC >Mature Secondary Structure MKKKLSVMLSVLLTSALLFTACGSKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDT CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHCCHH LKSKHGTWKKMNDKLPDENIELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKE HHHCCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHH YNEIKIGYDALTLSVNPQNPILKNKKGLTSQEIQKIFSGEAKTWKDVDTSLPANKIVLVV CCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCEEEEEE RDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL ECCCCCHHHHHHHHHHCCCHHCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCC TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFV CCEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCE SIK EEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA