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The map label for this gene is rnfD [H]

Identifier: 226947600

GI number: 226947600

Start: 465494

End: 466426

Strand: Direct

Name: rnfD [H]

Synonym: CLM_0437

Alternate gene names: 226947600

Gene position: 465494-466426 (Clockwise)

Preceding gene: 226947599

Following gene: 226947601

Centisome position: 11.2

GC content: 33.98

Gene sequence:

>933_bases
ATGTCTGAATCAATGTATACATTATCTTCATCTCCACATATTCGTTCAAAAGATTCTGTTCAATCAATAATGAGAGATGT
TGTAATAGCTTTACTTCCAGCAGCTATCGCAGGAATATATTTCTTTAAATTAAAAGCACTTTTAGTTATATTAACAGCAG
TTATTTCTTGTGTAGCAGCAGAATATATCTGGGAAAAAGCTACAGGAAGAGATATAAGTATAGGAGATTTAAGTGCAGTA
GTAACAGGAATGTTACTTGCATTTAACGTACCACCAACACTTCCATTGTGGATGGTAGTTATAGGAAGTTTCTTTACTAT
AATAGTTGTTAAACAATTCTTTGGAGGAATAGGACAAAATATAGTAAACCCAGCATTAGCAGGAAGAGCATTTTTACTTG
CATCTTGGCCAGTAGCTATGACTACTTGGACTGTTGATGGAGTTACTACAGCTACACCACTTGCTATTTTAAAGGGTGCA
CCAGGAGAATTACCAAACTTAGCATCAGCTTTTGTAGGACACATAGGAGGATGTATTGGTGAAACATCAGCTTTAGCATT
ACTTATAGGTTTTGCATATCTTTTATATAGAAGAATAATAACTTGGCATATACCAGTTACTTATGTAGGAACTGTATTTG
TACTTACAACAATAATAGGTAGACATGGAGCTATGTCTGGAAATGCAATATATGAAATATTTGTAGGTGGATTAATGTTA
GGTGCTATATTCATGGCAACTGATTATACAACTTCACCAATGACCAAAAAAGGACAGGTTATCTTCGCAATAGGATGTGG
TGTTATAACAACAGTTATACGTATATTCGGAGGATATCCAGAAGGAGTTTCTTACTCAATATTATTAATGAATTTAGTTG
TACCTCTAATAGATAAATTTGTAGCTCCGAGAGTATTTGGGGGTGTGAAATAA

Upstream 100 bases:

>100_bases
TGTCCAGCTAAACGTCATTTAATCCAATCCATAAGAACAGCTAAACGTACAGTTATAGCTTCAAAAAGAAAAAAATAAAT
TAAGTAAGGAGTGACTTTGG

Downstream 100 bases:

>100_bases
TGGAAAAGAATGAAACACTAAAATTAGGATTAAAGCTTTTTATAATAACAGCAATAGCTGGTCTTATATTAGGAGGAGCT
TTCATAATAACTAAGAAACC

Product: RnfABCDGE type electron transport complex subunit D

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSESMYTLSSSPHIRSKDSVQSIMRDVVIALLPAAIAGIYFFKLKALLVILTAVISCVAAEYIWEKATGRDISIGDLSAV
VTGMLLAFNVPPTLPLWMVVIGSFFTIIVVKQFFGGIGQNIVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGA
PGELPNLASAFVGHIGGCIGETSALALLIGFAYLLYRRIITWHIPVTYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSILLMNLVVPLIDKFVAPRVFGGVK

Sequences:

>Translated_310_residues
MSESMYTLSSSPHIRSKDSVQSIMRDVVIALLPAAIAGIYFFKLKALLVILTAVISCVAAEYIWEKATGRDISIGDLSAV
VTGMLLAFNVPPTLPLWMVVIGSFFTIIVVKQFFGGIGQNIVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGA
PGELPNLASAFVGHIGGCIGETSALALLIGFAYLLYRRIITWHIPVTYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSILLMNLVVPLIDKFVAPRVFGGVK
>Mature_309_residues
SESMYTLSSSPHIRSKDSVQSIMRDVVIALLPAAIAGIYFFKLKALLVILTAVISCVAAEYIWEKATGRDISIGDLSAVV
TGMLLAFNVPPTLPLWMVVIGSFFTIIVVKQFFGGIGQNIVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGAP
GELPNLASAFVGHIGGCIGETSALALLIGFAYLLYRRIITWHIPVTYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLMLG
AIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSILLMNLVVPLIDKFVAPRVFGGVK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=351, Percent_Identity=33.9031339031339, Blast_Score=186, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 33002; Mature: 32871

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESMYTLSSSPHIRSKDSVQSIMRDVVIALLPAAIAGIYFFKLKALLVILTAVISCVAA
CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYIWEKATGRDISIGDLSAVVTGMLLAFNVPPTLPLWMVVIGSFFTIIVVKQFFGGIGQN
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGAPGELPNLASAFVGHIGGCIG
HHHHHHHCCCHHEECCCHHHEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ETSALALLIGFAYLLYRRIITWHIPVTYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSILLMNLVVPLIDKF
HHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
VAPRVFGGVK
HHHHHHCCCC
>Mature Secondary Structure 
SESMYTLSSSPHIRSKDSVQSIMRDVVIALLPAAIAGIYFFKLKALLVILTAVISCVAA
CCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYIWEKATGRDISIGDLSAVVTGMLLAFNVPPTLPLWMVVIGSFFTIIVVKQFFGGIGQN
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGAPGELPNLASAFVGHIGGCIG
HHHHHHHCCCHHEECCCHHHEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ETSALALLIGFAYLLYRRIITWHIPVTYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLML
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSILLMNLVVPLIDKF
HHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
VAPRVFGGVK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA