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The map label for this gene is 226947569

Identifier: 226947569

GI number: 226947569

Start: 426610

End: 427239

Strand: Direct

Name: 226947569

Synonym: CLM_0406

Alternate gene names: NA

Gene position: 426610-427239 (Clockwise)

Preceding gene: 226947568

Following gene: 226947570

Centisome position: 10.27

GC content: 26.67

Gene sequence:

>630_bases
ATGTTTTTGATTGAACAACTTTCAAATAAAATAGGTAATAAAATTGCAAATAATTTAGAATTAGATAAAGATACGGAAGA
GATTATTACATATGGAGCTTTTTCAGTATTGCAAGCAATATGGGCACTTTCATGTGTAGTAATTTTAGGTGCTATATGTA
ATGTATTAATTGAATCTGTAATTATCGCATTAACTGCAGCTACATATAGGAAATATTCTGGTGGAATGCATGCTAACACA
CCTAATAAGTGTGCAATTTTAGGAGCTATAGTTTTTGTAGGATTTGCATTAATAGTAAAAAATATTAATATAGGTGTGAA
TTTATTTCTTCCAGTAATTTGTATTTTTACATTCATTTATTCATATTATGCAATTTATAAATTTGTACCAGTAGATACCA
AAGCTAAGCCGATAGAAAATGAAAGTGAAATATTAAAATTAAGAAGGTATTCTTTTTTTATAATTAGTATTTTAATCCTT
ATTGAAGTACTACTTTTGTTATTGTATTTTGAATATAAGAATGAAATGTTGATTTATTACGCTAAATGTATAATTGCAGG
TATTTTATGGCAGAGTTTTACGCTTACCCCTTTAGCTAAGAGGGTGTTTGCTAATATAGCAATGGAATAA

Upstream 100 bases:

>100_bases
AAGGATCCATTAAAAAAATGTATTTATTTAATGCCATCTATTATTGTTTTAGTAATTATAGTTTTATTTATATTTAAAAT
AAAAGATAGGAGAGTAAAGG

Downstream 100 bases:

>100_bases
TAGATTATTCCATTGAAATGAATTATTTGTTAATATATAATGTATAATAATATAAAATTATAGATAATAATATAAAATTA
TAGGGGGAATTATAATGAAA

Product: putative accessory gene regulator protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESVIIALTAATYRKYSGGMHANT
PNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIYSYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILIL
IEVLLLLLYFEYKNEMLIYYAKCIIAGILWQSFTLTPLAKRVFANIAME

Sequences:

>Translated_209_residues
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESVIIALTAATYRKYSGGMHANT
PNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIYSYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILIL
IEVLLLLLYFEYKNEMLIYYAKCIIAGILWQSFTLTPLAKRVFANIAME
>Mature_209_residues
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESVIIALTAATYRKYSGGMHANT
PNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIYSYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILIL
IEVLLLLLYFEYKNEMLIYYAKCIIAGILWQSFTLTPLAKRVFANIAME

Specific function: May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor (Potential) [H]

COG id: COG4512

COG function: function code OTK; Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AgrB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006741 [H]

Pfam domain/function: PF04647 AgrB [H]

EC number: NA

Molecular weight: Translated: 23575; Mature: 23575

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESV
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIALTAATYRKYSGGMHANTPNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIY
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILILIEVLLLLLYFEYKNEMLIYY
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AKCIIAGILWQSFTLTPLAKRVFANIAME
HHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESV
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIALTAATYRKYSGGMHANTPNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIY
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILILIEVLLLLLYFEYKNEMLIYY
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AKCIIAGILWQSFTLTPLAKRVFANIAME
HHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]