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The map label for this gene is 226947562

Identifier: 226947562

GI number: 226947562

Start: 419880

End: 420569

Strand: Direct

Name: 226947562

Synonym: CLM_0399

Alternate gene names: NA

Gene position: 419880-420569 (Clockwise)

Preceding gene: 226947561

Following gene: 226947563

Centisome position: 10.1

GC content: 24.06

Gene sequence:

>690_bases
ATGATTAATACAGAGACTATATCTAATAATATTGCTAAAAAAATAGCATCAGAATTAAATTTAGATAATGATAAAAAAGA
GGTTATAGCCTACGGAACTTTTGCCCTTTTTCAAACTATATTTTCTATATTTCTTATAATTATATTTGGATATTTATTCA
ATGTTCAAATTGAAGCTCTAATGATATCCTTTACAATAAGTATATTAAGGAAGTCTTCAGGTGGAGTACATGCTACTTCT
CCAAATAATTGTGCTATTATAGGAACAATTATTTGTGTTGGGTTTGCCATAATAGTAGTATTTTTAACAAGTTCATTAAT
TAATTTAAATATATTATTATTTTTAGGGGTAATTATTTTTGTATGGTCCTACTACATTATTTATAAACTAGCCCCTGTAG
ACTCTAAGGCTAAACCTATACAGAAATCTAAAAGAGTAAAAAAACTCAGAAAAAGTTCGATTATAACATTAAGTGTCTAT
TTAGTTATCATATTAATTAATTTTATTTTATATTATAAAATGATGAATAAAAAGTATATTATATATTCTTTATGTGTATA
TAGTGGAATAGTATGGCAAACATTTACTCTTACACGGTATGGGCATTTAGTAGTGAAAAAATTAGATGATTTTTTAAATT
ATATGGTAGATATTAAAAAGGGGGATAAGAGTCATGAAAAAATTAAATAA

Upstream 100 bases:

>100_bases
CCTAATTTGAAAACTATATATGGAATTCCATCTTTGATTATTTTTGCTTGTATCATAGTATTACGTTATATTAGATTATT
AAAAAGAAAAGAGTTGCAAT

Downstream 100 bases:

>100_bases
AAAGGTATTAATGTTAGTTGCAACATTTACAACTCTTCTTGCATCTATAGTAGCATCATCAGCGTGTTATTGGTGCGTAT
ATCAACCTAAAGAGCCAAAA

Product: putative accessory gene regulator protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MINTETISNNIAKKIASELNLDNDKKEVIAYGTFALFQTIFSIFLIIIFGYLFNVQIEALMISFTISILRKSSGGVHATS
PNNCAIIGTIICVGFAIIVVFLTSSLINLNILLFLGVIIFVWSYYIIYKLAPVDSKAKPIQKSKRVKKLRKSSIITLSVY
LVIILINFILYYKMMNKKYIIYSLCVYSGIVWQTFTLTRYGHLVVKKLDDFLNYMVDIKKGDKSHEKIK

Sequences:

>Translated_229_residues
MINTETISNNIAKKIASELNLDNDKKEVIAYGTFALFQTIFSIFLIIIFGYLFNVQIEALMISFTISILRKSSGGVHATS
PNNCAIIGTIICVGFAIIVVFLTSSLINLNILLFLGVIIFVWSYYIIYKLAPVDSKAKPIQKSKRVKKLRKSSIITLSVY
LVIILINFILYYKMMNKKYIIYSLCVYSGIVWQTFTLTRYGHLVVKKLDDFLNYMVDIKKGDKSHEKIK
>Mature_229_residues
MINTETISNNIAKKIASELNLDNDKKEVIAYGTFALFQTIFSIFLIIIFGYLFNVQIEALMISFTISILRKSSGGVHATS
PNNCAIIGTIICVGFAIIVVFLTSSLINLNILLFLGVIIFVWSYYIIYKLAPVDSKAKPIQKSKRVKKLRKSSIITLSVY
LVIILINFILYYKMMNKKYIIYSLCVYSGIVWQTFTLTRYGHLVVKKLDDFLNYMVDIKKGDKSHEKIK

Specific function: May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AgrB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006741 [H]

Pfam domain/function: PF04647 AgrB [H]

EC number: NA

Molecular weight: Translated: 26111; Mature: 26111

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINTETISNNIAKKIASELNLDNDKKEVIAYGTFALFQTIFSIFLIIIFGYLFNVQIEAL
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MISFTISILRKSSGGVHATSPNNCAIIGTIICVGFAIIVVFLTSSLINLNILLFLGVIIF
HHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWSYYIIYKLAPVDSKAKPIQKSKRVKKLRKSSIITLSVYLVIILINFILYYKMMNKKYI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IYSLCVYSGIVWQTFTLTRYGHLVVKKLDDFLNYMVDIKKGDKSHEKIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MINTETISNNIAKKIASELNLDNDKKEVIAYGTFALFQTIFSIFLIIIFGYLFNVQIEAL
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MISFTISILRKSSGGVHATSPNNCAIIGTIICVGFAIIVVFLTSSLINLNILLFLGVIIF
HHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWSYYIIYKLAPVDSKAKPIQKSKRVKKLRKSSIITLSVYLVIILINFILYYKMMNKKYI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IYSLCVYSGIVWQTFTLTRYGHLVVKKLDDFLNYMVDIKKGDKSHEKIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]