Click here to switch to the map view.

The map label for this gene is 226947558

Identifier: 226947558

GI number: 226947558

Start: 415824

End: 416723

Strand: Direct

Name: 226947558

Synonym: CLM_0395

Alternate gene names: NA

Gene position: 415824-416723 (Clockwise)

Preceding gene: 226947557

Following gene: 226947559

Centisome position: 10.01

GC content: 27.22

Gene sequence:

>900_bases
ATGAACTTGGAGTATATTACAGCAAAAACTTTGATATCAAATTATAGTGAGAATAATTGGTGGTTTGGAATAAATTATAA
TATGAATATTTATAAAGGTTGTTGTCATGGCTGTATTTATTGTGATTCTAGAAGCGAATGTTATGGTATAGAGAACTTTG
ATAAAGTAAGAGCAAAGAAAAATGCAATACAGATTATTAAAAATGAATTAAGAAGAAAAAGAAAAAAAGGGGTTATAGGA
ACTGGAGCCATGAGTGATCCTTATAATCCTTTCGAAAGAGAATTGATGCTTACAAGAATGGCATTAGAAGAGATAAATAC
TCTCAATTTTGGAGCAGCGATAGCAACTAAAAGTAATCTTATAGTACGAGATATTGATATTTTAAAAAAAATTAAGACCC
ACTCACCTACACTAGTAAAGATTACAATAACTACCTATGATGATGAATTGTGCAAAAAAGTTGAACCTAATGTTTGTGTA
ACATCTAAAAGATTTCAAACTATAAAAGAACTTTCTTACAATGGTATATTTACCGGTATATTACTTATGCCTATTTTGCC
CTTTATAAATGATAATGGAGAAAATATTGTGAAGATAGTAAAAAAGGCTCATGAATGTGGTGCAAAATTTATTTTTGCAT
ATGGTATGGGATTAACTTTAAGAGGAAATCAGAGGGAATATTTTTATAGAAAACTAATAAGAGAGTTTCCAAAAGAAAAT
ATGATAGCAAAATATAAAAATGCATTTGGGAATAAATATGAATGTGTCTCACTTAATCATAAAAAATTATGGAGTATATT
TAAAAATGAATGTGAAAAATTAGGTATTTTATATAAAATGGAAGATATAATTTTGGCATATAAAGATAATTATGGAAATA
ATCAGCTAAGCTGGTTTTAG

Upstream 100 bases:

>100_bases
AAAATATGATAAAGATTTATTTAATATGACATACAGATGTCACATATAATTTGGTACTATGAATACAAATAATTACTTAA
AAACTTATTAAGGAGTGATA

Downstream 100 bases:

>100_bases
TAATTTAAATAATAAAAAAACTCATTATATAGTAATTTACTTTCAATCAAAACTGTGTAATAATATAGAAATGTAAAAAA
CTTAAAAGTTCTTATAAATA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNLEYITAKTLISNYSENNWWFGINYNMNIYKGCCHGCIYCDSRSECYGIENFDKVRAKKNAIQIIKNELRRKRKKGVIG
TGAMSDPYNPFERELMLTRMALEEINTLNFGAAIATKSNLIVRDIDILKKIKTHSPTLVKITITTYDDELCKKVEPNVCV
TSKRFQTIKELSYNGIFTGILLMPILPFINDNGENIVKIVKKAHECGAKFIFAYGMGLTLRGNQREYFYRKLIREFPKEN
MIAKYKNAFGNKYECVSLNHKKLWSIFKNECEKLGILYKMEDIILAYKDNYGNNQLSWF

Sequences:

>Translated_299_residues
MNLEYITAKTLISNYSENNWWFGINYNMNIYKGCCHGCIYCDSRSECYGIENFDKVRAKKNAIQIIKNELRRKRKKGVIG
TGAMSDPYNPFERELMLTRMALEEINTLNFGAAIATKSNLIVRDIDILKKIKTHSPTLVKITITTYDDELCKKVEPNVCV
TSKRFQTIKELSYNGIFTGILLMPILPFINDNGENIVKIVKKAHECGAKFIFAYGMGLTLRGNQREYFYRKLIREFPKEN
MIAKYKNAFGNKYECVSLNHKKLWSIFKNECEKLGILYKMEDIILAYKDNYGNNQLSWF
>Mature_299_residues
MNLEYITAKTLISNYSENNWWFGINYNMNIYKGCCHGCIYCDSRSECYGIENFDKVRAKKNAIQIIKNELRRKRKKGVIG
TGAMSDPYNPFERELMLTRMALEEINTLNFGAAIATKSNLIVRDIDILKKIKTHSPTLVKITITTYDDELCKKVEPNVCV
TSKRFQTIKELSYNGIFTGILLMPILPFINDNGENIVKIVKKAHECGAKFIFAYGMGLTLRGNQREYFYRKLIREFPKEN
MIAKYKNAFGNKYECVSLNHKKLWSIFKNECEKLGILYKMEDIILAYKDNYGNNQLSWF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34780; Mature: 34780

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEYITAKTLISNYSENNWWFGINYNMNIYKGCCHGCIYCDSRSECYGIENFDKVRAKK
CCCCEEHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHH
NAIQIIKNELRRKRKKGVIGTGAMSDPYNPFERELMLTRMALEEINTLNFGAAIATKSNL
HHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCE
IVRDIDILKKIKTHSPTLVKITITTYDDELCKKVEPNVCVTSKRFQTIKELSYNGIFTGI
EEHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHCCCCEEECHHHHHHHHHHCCCCHHHHH
LLMPILPFINDNGENIVKIVKKAHECGAKFIFAYGMGLTLRGNQREYFYRKLIREFPKEN
HHHHHHHHHCCCCHHHHHHHHHHHHCCHHEEEEECCCEEEECCCHHHHHHHHHHHCCCCC
MIAKYKNAFGNKYECVSLNHKKLWSIFKNECEKLGILYKMEDIILAYKDNYGNNQLSWF
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCHHEEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNLEYITAKTLISNYSENNWWFGINYNMNIYKGCCHGCIYCDSRSECYGIENFDKVRAKK
CCCCEEHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHH
NAIQIIKNELRRKRKKGVIGTGAMSDPYNPFERELMLTRMALEEINTLNFGAAIATKSNL
HHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCE
IVRDIDILKKIKTHSPTLVKITITTYDDELCKKVEPNVCVTSKRFQTIKELSYNGIFTGI
EEHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHCCCCEEECHHHHHHHHHHCCCCHHHHH
LLMPILPFINDNGENIVKIVKKAHECGAKFIFAYGMGLTLRGNQREYFYRKLIREFPKEN
HHHHHHHHHCCCCHHHHHHHHHHHHCCHHEEEEECCCEEEECCCHHHHHHHHHHHCCCCC
MIAKYKNAFGNKYECVSLNHKKLWSIFKNECEKLGILYKMEDIILAYKDNYGNNQLSWF
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCHHEEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]