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The map label for this gene is rhaR [C]

Identifier: 226947541

GI number: 226947541

Start: 397285

End: 398256

Strand: Reverse

Name: rhaR [C]

Synonym: CLM_0377

Alternate gene names: 226947541

Gene position: 398256-397285 (Counterclockwise)

Preceding gene: 226947573

Following gene: 226947505

Centisome position: 9.58

GC content: 27.37

Gene sequence:

>972_bases
ATGAAAATAGATAAAACTACCAGAATAATTAAAGAATTTGCTTTACGACTTAATTGTAAAGAGTATGATTATAGAAATGG
AAGTATTTATCGTTTACCTGAGGAAAATGGAGACAGTTGGTTTATAGAGGTTGAACCTGATGATGGACTACTTCTCAGTG
ATGCTTACTTTTCATTACTGAAGCCAGTGACCTATGTTTATAATATTCCAGAGAATCATATCTTAATATGCTCTTTATAT
AGTGGTAATATTACTATTGTTGAGAATGGTAAAAAAGCAAAACGTTTGTATCAAGGTATGCATTTTTTTGTTACTAGTGG
AAAACAAATTAAAATAATTATTAATACAGATGAACCTGTATGGTACACTCTTGCTTTAGTATTTGAAGACTTTATTAAAA
AATATATAAAAGATTTTTCATCCCAACCTTCATATATTCTATCTAAAGATATAATATTAAAGACAAATCATTTTAATACA
CCTGAATTACTTATGATATTTGAACAATTAAAATATGCTATTAGAAACTGTGATCTTCCGCATATGTATTATATAGGTAA
AATATATGAAATTTTTGCTATTATTATACGTAATTTAAAAAATGAGGAATATTTAGATATACCTCGTCATAATCATTTGA
GTTACCAAAACAAACAATTTATGTGGCTTCTAAAGGCAGAAATAGATAAAAACATATTAAATCCACCTACAATTGAAGAA
ATGAAAAATATAGCTGAGATGAGCGAATCTAAACTTAGGCGATGCTTCAAAGCAACCTATGGAAAAACAATTTATGAATA
TATTAGATATAAAAAGATGGAACAAGCAATTAGATTTCTATCCCATGATGAAATGAGTATTCATAATATTGCCACCACCT
TAGGTTATGAAAGTGCAAGTAAATTTTCAGCAGCATTTAAAAAAATTTACGGTATTACTCCTAGTGCATTTAGAAAATCC
TTTAATCTGTAA

Upstream 100 bases:

>100_bases
TTTTAGTAGGAATATATAAAGTATTAATATCATTGCTATTTGAACAAATAAATGTATATAAAAAACAAATTGCTATTAAG
TAAAGAAAGGATTTAAATCC

Downstream 100 bases:

>100_bases
TTATGATTGAAAGCTAAAGCTTTATTGTCAGTTCCTAATTCTCACTATTAAACTAATCTCAAACTTTCACCAATAAGCTA
AGTTATTGCCAGTACTGAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcription Regulator; Transcriptional Regulatory Protein; AraC Family Two Component Transcriptional Regulator; Transcriptional Regulator AraC/YbtA; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; AraC Family Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; Regulatory Protein; Two Component AraC Family Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Two-Component Regulatory System Response Regulator Protein

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKIDKTTRIIKEFALRLNCKEYDYRNGSIYRLPEENGDSWFIEVEPDDGLLLSDAYFSLLKPVTYVYNIPENHILICSLY
SGNITIVENGKKAKRLYQGMHFFVTSGKQIKIIINTDEPVWYTLALVFEDFIKKYIKDFSSQPSYILSKDIILKTNHFNT
PELLMIFEQLKYAIRNCDLPHMYYIGKIYEIFAIIIRNLKNEEYLDIPRHNHLSYQNKQFMWLLKAEIDKNILNPPTIEE
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNIATTLGYESASKFSAAFKKIYGITPSAFRKS
FNL

Sequences:

>Translated_323_residues
MKIDKTTRIIKEFALRLNCKEYDYRNGSIYRLPEENGDSWFIEVEPDDGLLLSDAYFSLLKPVTYVYNIPENHILICSLY
SGNITIVENGKKAKRLYQGMHFFVTSGKQIKIIINTDEPVWYTLALVFEDFIKKYIKDFSSQPSYILSKDIILKTNHFNT
PELLMIFEQLKYAIRNCDLPHMYYIGKIYEIFAIIIRNLKNEEYLDIPRHNHLSYQNKQFMWLLKAEIDKNILNPPTIEE
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNIATTLGYESASKFSAAFKKIYGITPSAFRKS
FNL
>Mature_323_residues
MKIDKTTRIIKEFALRLNCKEYDYRNGSIYRLPEENGDSWFIEVEPDDGLLLSDAYFSLLKPVTYVYNIPENHILICSLY
SGNITIVENGKKAKRLYQGMHFFVTSGKQIKIIINTDEPVWYTLALVFEDFIKKYIKDFSSQPSYILSKDIILKTNHFNT
PELLMIFEQLKYAIRNCDLPHMYYIGKIYEIFAIIIRNLKNEEYLDIPRHNHLSYQNKQFMWLLKAEIDKNILNPPTIEE
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNIATTLGYESASKFSAAFKKIYGITPSAFRKS
FNL

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38156; Mature: 38156

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDKTTRIIKEFALRLNCKEYDYRNGSIYRLPEENGDSWFIEVEPDDGLLLSDAYFSLL
CCCCHHHHHHHHHHHHCCCHHCCCCCCCEEECCCCCCCEEEEEECCCCCEEEHHHHHHHH
KPVTYVYNIPENHILICSLYSGNITIVENGKKAKRLYQGMHFFVTSGKQIKIIINTDEPV
HHHHEEEECCCCCEEEEEEECCCEEEEECCHHHHHHHCCCEEEEECCCEEEEEEECCCCH
WYTLALVFEDFIKKYIKDFSSQPSYILSKDIILKTNHFNTPELLMIFEQLKYAIRNCDLP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
HMYYIGKIYEIFAIIIRNLKNEEYLDIPRHNHLSYQNKQFMWLLKAEIDKNILNPPTIEE
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCCHHH
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNIATTLGYESAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
KFSAAFKKIYGITPSAFRKSFNL
HHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure
MKIDKTTRIIKEFALRLNCKEYDYRNGSIYRLPEENGDSWFIEVEPDDGLLLSDAYFSLL
CCCCHHHHHHHHHHHHCCCHHCCCCCCCEEECCCCCCCEEEEEECCCCCEEEHHHHHHHH
KPVTYVYNIPENHILICSLYSGNITIVENGKKAKRLYQGMHFFVTSGKQIKIIINTDEPV
HHHHEEEECCCCCEEEEEEECCCEEEEECCHHHHHHHCCCEEEEECCCEEEEEEECCCCH
WYTLALVFEDFIKKYIKDFSSQPSYILSKDIILKTNHFNTPELLMIFEQLKYAIRNCDLP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
HMYYIGKIYEIFAIIIRNLKNEEYLDIPRHNHLSYQNKQFMWLLKAEIDKNILNPPTIEE
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCCHHH
MKNIAEMSESKLRRCFKATYGKTIYEYIRYKKMEQAIRFLSHDEMSIHNIATTLGYESAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
KFSAAFKKIYGITPSAFRKSFNL
HHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA