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The map label for this gene is yrkC [H]

Identifier: 226947468

GI number: 226947468

Start: 288864

End: 289520

Strand: Direct

Name: yrkC [H]

Synonym: CLM_0299

Alternate gene names: 226947468

Gene position: 288864-289520 (Clockwise)

Preceding gene: 226947467

Following gene: 226947469

Centisome position: 6.95

GC content: 35.46

Gene sequence:

>657_bases
ATGTATAATACTTATATGATGTATACATGTCCTTATTATGCTAACATACCAATGTATAACTCATATGACATGTATAGTCC
TTATGATACTTATTCATGTCCTTGTTTCGTTGACACACCAAGTTATAATGATTCAGATTTTTCCATGCAGCGTAATAACA
GGCATATTCGTTTTACTGATGAATTGGAGTATGGTTCAAGATTTGCTTCACCACAATTAGTAAAGAGCAATGGGGCAATT
GAATTAAAGGATTATGGTCCACAACCTTTTGTAGTTGATATAGATGAAGCTACTAAGCAAAATAATACTTTTCGTACTGC
TTTATGGACAGGAACACATCTACAAGTTACCTTGATGAGCATTAATGTTGGTGATGATATAGGATTAGAAATGCATTCGA
ATGTTGATCAGTTTATACGTGTTGAAGAAGGCCAAGGACTTGTTAAAATTGGAAGCAATAAGGAGATGCTGAATTTTCAA
GCAGAAGTTTATGATGATTTTGCAATAATGATACCTGCTGGTACATGGCACAATATTATCAATACGGGCAATAAACCACT
TAAAGCATATTCTATCTATGCACCCCCTCAACATCCACAGGGTACAGTTCATGAGACCAAAGCAGATGCAGAAGCTGCTG
AAGAGAGTCACCACTAA

Upstream 100 bases:

>100_bases
GTATTGTTGGGAATAGGAGTTTAGCTATAATCAATACAAGCACATTTCCAAAATTTAAAACATATTATAATTTTATAAGA
TTATAGAAGGGGAGAAAAAT

Downstream 100 bases:

>100_bases
TTAAGATCAACTATATACAAGGTTATCACAAAGATAATTTGTGTAAATCTTATTATTGTTTAAAAAATTATCATGTATGT
GTTGCAAATACATGATTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MYNTYMMYTCPYYANIPMYNSYDMYSPYDTYSCPCFVDTPSYNDSDFSMQRNNRHIRFTDELEYGSRFASPQLVKSNGAI
ELKDYGPQPFVVDIDEATKQNNTFRTALWTGTHLQVTLMSINVGDDIGLEMHSNVDQFIRVEEGQGLVKIGSNKEMLNFQ
AEVYDDFAIMIPAGTWHNIINTGNKPLKAYSIYAPPQHPQGTVHETKADAEAAEESHH

Sequences:

>Translated_218_residues
MYNTYMMYTCPYYANIPMYNSYDMYSPYDTYSCPCFVDTPSYNDSDFSMQRNNRHIRFTDELEYGSRFASPQLVKSNGAI
ELKDYGPQPFVVDIDEATKQNNTFRTALWTGTHLQVTLMSINVGDDIGLEMHSNVDQFIRVEEGQGLVKIGSNKEMLNFQ
AEVYDDFAIMIPAGTWHNIINTGNKPLKAYSIYAPPQHPQGTVHETKADAEAAEESHH
>Mature_218_residues
MYNTYMMYTCPYYANIPMYNSYDMYSPYDTYSCPCFVDTPSYNDSDFSMQRNNRHIRFTDELEYGSRFASPQLVKSNGAI
ELKDYGPQPFVVDIDEATKQNNTFRTALWTGTHLQVTLMSINVGDDIGLEMHSNVDQFIRVEEGQGLVKIGSNKEMLNFQ
AEVYDDFAIMIPAGTWHNIINTGNKPLKAYSIYAPPQHPQGTVHETKADAEAAEESHH

Specific function: Unknown

COG id: COG0662

COG function: function code G; Mannose-6-phosphate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 24890; Mature: 24890

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNTYMMYTCPYYANIPMYNSYDMYSPYDTYSCPCFVDTPSYNDSDFSMQRNNRHIRFTD
CCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCEEEEEC
ELEYGSRFASPQLVKSNGAIELKDYGPQPFVVDIDEATKQNNTFRTALWTGTHLQVTLMS
CCCCCCCCCCCEEEECCCCEEEECCCCCCEEEECCHHCCCCCEEEEEEEECCEEEEEEEE
INVGDDIGLEMHSNVDQFIRVEEGQGLVKIGSNKEMLNFQAEVYDDFAIMIPAGTWHNII
EECCCCCCEEECCCCCCEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEECCCHHHHH
NTGNKPLKAYSIYAPPQHPQGTVHETKADAEAAEESHH
HCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MYNTYMMYTCPYYANIPMYNSYDMYSPYDTYSCPCFVDTPSYNDSDFSMQRNNRHIRFTD
CCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCEEEEEC
ELEYGSRFASPQLVKSNGAIELKDYGPQPFVVDIDEATKQNNTFRTALWTGTHLQVTLMS
CCCCCCCCCCCEEEECCCCEEEECCCCCCEEEECCHHCCCCCEEEEEEEECCEEEEEEEE
INVGDDIGLEMHSNVDQFIRVEEGQGLVKIGSNKEMLNFQAEVYDDFAIMIPAGTWHNII
EECCCCCCEEECCCCCCEEEEECCCCEEEECCCCCEEEEEEEEECCEEEEEECCCHHHHH
NTGNKPLKAYSIYAPPQHPQGTVHETKADAEAAEESHH
HCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]