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The map label for this gene is atpF

Identifier: 226947376

GI number: 226947376

Start: 181354

End: 181833

Strand: Direct

Name: atpF

Synonym: CLM_0196

Alternate gene names: 226947376

Gene position: 181354-181833 (Clockwise)

Preceding gene: 226947375

Following gene: 226947377

Centisome position: 4.36

GC content: 26.67

Gene sequence:

>480_bases
ATGAATATAAGCATTCCGCAAATTATAGCTGCAATATTAAATTTTATTATACTGCTTTTAATAGTAAAACACTTTTGGTT
TGATAAAATAACTGCTGTAGTTGATTCAAGACAAAGTGAAATTATAAATAAAATAGAAGATACAGATAAGAATCAAAAAT
TAGCATTAGAACTAAAAGAAAAAAATGAATTAGAACTAAGCAATGCAAAAAAACAAGGTAAAACTATAGTAGAAGAATAT
AAATCAAAAGCTGAAAATGTATATGAGGATATTGTTAAAGAAGCTCATGAAGAAGCAGATAGAATAATAAAAAAATCAAG
ATTAGAAGCGGAAAGGCAAAAGAAAAATGCAGAAGAAGAAATAAGGGCAGAAGCAGTAGAACTTGCAGTATTGGTTTCTT
CTAAAACATTAGAAAAAACTATAGATGATCTTGAGCATAGAAGACTTATAAAGGATTTTATAAGTAAGGTAGGTATATAG

Upstream 100 bases:

>100_bases
ATTATTTTTAATATTTAAGATTTAAGGTAATTTAATTTTATAAGTACCTATTTATTATAGGTGCTTATAAAATTTAAGGC
CGAAGGGAGGCTTCCTATAT

Downstream 100 bases:

>100_bases
CTATGTATGAATATTTAGATAGAAGATATGCTTTAGCCCTCTATGAAGTAGCAGAAGAGAACAATAAAGTAGATGAATAC
TTAAGAGACTTAAAAGAAGT

Product: F0F1 ATP synthase subunit B

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MNISIPQIIAAILNFIILLLIVKHFWFDKITAVVDSRQSEIINKIEDTDKNQKLALELKEKNELELSNAKKQGKTIVEEY
KSKAENVYEDIVKEAHEEADRIIKKSRLEAERQKKNAEEEIRAEAVELAVLVSSKTLEKTIDDLEHRRLIKDFISKVGI

Sequences:

>Translated_159_residues
MNISIPQIIAAILNFIILLLIVKHFWFDKITAVVDSRQSEIINKIEDTDKNQKLALELKEKNELELSNAKKQGKTIVEEY
KSKAENVYEDIVKEAHEEADRIIKKSRLEAERQKKNAEEEIRAEAVELAVLVSSKTLEKTIDDLEHRRLIKDFISKVGI
>Mature_159_residues
MNISIPQIIAAILNFIILLLIVKHFWFDKITAVVDSRQSEIINKIEDTDKNQKLALELKEKNELELSNAKKQGKTIVEEY
KSKAENVYEDIVKEAHEEADRIIKKSRLEAERQKKNAEEEIRAEAVELAVLVSSKTLEKTIDDLEHRRLIKDFISKVGI

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_CLOB1 (A7FQH5)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001382559.1
- STRING:   A7FQH5
- GeneID:   5396620
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_0188
- eggNOG:   COG0711
- HOGENOM:   HBG419026
- OMA:   IRIMNER
- ProtClustDB:   PRK13461
- BioCyc:   CBOT441770:CLB_0188-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146
- InterPro:   IPR005864
- TIGRFAMs:   TIGR01144

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 18366; Mature: 18366

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1105e6c0)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISIPQIIAAILNFIILLLIVKHFWFDKITAVVDSRQSEIINKIEDTDKNQKLALELKE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KNELELSNAKKQGKTIVEEYKSKAENVYEDIVKEAHEEADRIIKKSRLEAERQKKNAEEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IRAEAVELAVLVSSKTLEKTIDDLEHRRLIKDFISKVGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MNISIPQIIAAILNFIILLLIVKHFWFDKITAVVDSRQSEIINKIEDTDKNQKLALELKE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KNELELSNAKKQGKTIVEEYKSKAENVYEDIVKEAHEEADRIIKKSRLEAERQKKNAEEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IRAEAVELAVLVSSKTLEKTIDDLEHRRLIKDFISKVGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA