Click here to switch to the map view.

The map label for this gene is yndF [H]

Identifier: 226947348

GI number: 226947348

Start: 156265

End: 157446

Strand: Direct

Name: yndF [H]

Synonym: CLM_0168

Alternate gene names: 226947348

Gene position: 156265-157446 (Clockwise)

Preceding gene: 226947347

Following gene: 226947349

Centisome position: 3.76

GC content: 27.24

Gene sequence:

>1182_bases
ATGAAATCAAAAAAGTGTTTAGCTATAATACTTATATTATCAACCATATGTATGACAGGATGTTGGGATAAGATAGAAAT
AAATGAAAGAGCATTTGCTTCAGTTATCGGAGTGGATGCAGGAAAGGATATAGGTAAAGAAAAACAGCTAAAGGAAATAA
GTGAGTCAGCATCTTTTACAGGGAGTAAATTTGATAAAATAAAGGTAACCTACGCTTTCCCGGATATAAGTAAATTAGGC
CCTGAAAAGGGAGGAACGGCAGTAGATAATACTATGTCAGTAGATGCATATTCAATGCAGGATAGTATAAATGAAGTTAT
AAATAAAAGCAGTAGAACTTTAAGTTTTGGACACTTAAAGCTTATAGTTTTAAATACAAGTATTTTGGATTATACCAATA
CTTTTAAAGAGGTACTAGATTATCTACAAAGACAACCAGCTATAAACAGGATGATTTATATAGTATTTTCAGAAGATAAA
AGTGAAGAAATACTTAAATTTAGGCCTAACATGGAAAAAAGTATAGAAAATTATATAATAGGTATATTAGAAAATAATAA
AAAAAGTAATACATCTTCCCCTCTTACATTAAATGAATTTTTAGAAAAGACTAGTCAAAATAATACAACTCTGATGCCCG
TTATTAATATAGATAAAAAAAATAAAGATCTTAAAATATCAAAAGTTGCTGTGATAAAAAATGATAAAATAAAGGGATAT
GTAAGTACAGAACAGGCTAATAGTATCCAACTTATTAATAAAAGATTCAAAGGAGGAACTAGAACAATAATAAGAGATGG
AAGTCCTTTAGATTATTCCATAGAAAATAATGAGAGAAAAATTAGCATAAGGGATAAAAAGAAATTAAGTGTTGATATAA
AATTAAACTTAGAGGGTCAAATTAAAGGATATAATATTGATAAACAGATATCATCTAATGAAGGGAATATAAAAAAAATA
GAAGCAAATTTAAATAAAGCCATAACACAGGATATAAAAGAAGTTATAAGAATATCTCAAACTGAATATAATACAGATAT
TTTAGATCTAGGAGAGTTCATACATAAGTATCACCCTAAACTGTGGAAAGAAATAAAAGGTAATTGGAATGAACTATATA
AAACTGTAGATATAAATGTTAGTGTGGATACAAAAGTTAGAAGAATAGGAGCAATAGAATAA

Upstream 100 bases:

>100_bases
ATAATTTTATTTTTAATAAGTAAATCTAAATTAAGTAAGAGGAAGGGATAATATTAAAAGTAAGTATAAGCATAAATATA
TATTTGGGAGTTGTTATATT

Downstream 100 bases:

>100_bases
TTTTTTTAAATTGAATATAACTATAATATTTGGGAATAATAACTAATAAATAAGATCAATAGGGGGAATATATATGAAAA
AAATATTAGTCTTTATGTTG

Product: germination protein, Ger(x)C family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVIGVDAGKDIGKEKQLKEISESASFTGSKFDKIKVTYAFPDISKLG
PEKGGTAVDNTMSVDAYSMQDSINEVINKSSRTLSFGHLKLIVLNTSILDYTNTFKEVLDYLQRQPAINRMIYIVFSEDK
SEEILKFRPNMEKSIENYIIGILENNKKSNTSSPLTLNEFLEKTSQNNTTLMPVINIDKKNKDLKISKVAVIKNDKIKGY
VSTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKISIRDKKKLSVDIKLNLEGQIKGYNIDKQISSNEGNIKKI
EANLNKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPKLWKEIKGNWNELYKTVDINVSVDTKVRRIGAIE

Sequences:

>Translated_393_residues
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVIGVDAGKDIGKEKQLKEISESASFTGSKFDKIKVTYAFPDISKLG
PEKGGTAVDNTMSVDAYSMQDSINEVINKSSRTLSFGHLKLIVLNTSILDYTNTFKEVLDYLQRQPAINRMIYIVFSEDK
SEEILKFRPNMEKSIENYIIGILENNKKSNTSSPLTLNEFLEKTSQNNTTLMPVINIDKKNKDLKISKVAVIKNDKIKGY
VSTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKISIRDKKKLSVDIKLNLEGQIKGYNIDKQISSNEGNIKKI
EANLNKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPKLWKEIKGNWNELYKTVDINVSVDTKVRRIGAIE
>Mature_393_residues
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVIGVDAGKDIGKEKQLKEISESASFTGSKFDKIKVTYAFPDISKLG
PEKGGTAVDNTMSVDAYSMQDSINEVINKSSRTLSFGHLKLIVLNTSILDYTNTFKEVLDYLQRQPAINRMIYIVFSEDK
SEEILKFRPNMEKSIENYIIGILENNKKSNTSSPLTLNEFLEKTSQNNTTLMPVINIDKKNKDLKISKVAVIKNDKIKGY
VSTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKISIRDKKKLSVDIKLNLEGQIKGYNIDKQISSNEGNIKKI
EANLNKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPKLWKEIKGNWNELYKTVDINVSVDTKVRRIGAIE

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 44591; Mature: 44591

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVIGVDAGKDIGKEKQLKEISESASFT
CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
GSKFDKIKVTYAFPDISKLGPEKGGTAVDNTMSVDAYSMQDSINEVINKSSRTLSFGHLK
CCCCEEEEEEEECCCHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCEEEECCEE
LIVLNTSILDYTNTFKEVLDYLQRQPAINRMIYIVFSEDKSEEILKFRPNMEKSIENYII
EEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHEECCCHHHHHHHEEE
GILENNKKSNTSSPLTLNEFLEKTSQNNTTLMPVINIDKKNKDLKISKVAVIKNDKIKGY
EEEECCCCCCCCCCEEHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEECCCEEEE
VSTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKISIRDKKKLSVDIKLNLEGQ
EECCCCCHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEEEECCCEEEEEEEEEEECE
IKGYNIDKQISSNEGNIKKIEANLNKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPK
EECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHH
LWKEIKGNWNELYKTVDINVSVDTKVRRIGAIE
HHHHHCCCHHHEEEEEEEEEEECCHHHHCCCCC
>Mature Secondary Structure
MKSKKCLAIILILSTICMTGCWDKIEINERAFASVIGVDAGKDIGKEKQLKEISESASFT
CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
GSKFDKIKVTYAFPDISKLGPEKGGTAVDNTMSVDAYSMQDSINEVINKSSRTLSFGHLK
CCCCEEEEEEEECCCHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCEEEECCEE
LIVLNTSILDYTNTFKEVLDYLQRQPAINRMIYIVFSEDKSEEILKFRPNMEKSIENYII
EEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHEECCCHHHHHHHEEE
GILENNKKSNTSSPLTLNEFLEKTSQNNTTLMPVINIDKKNKDLKISKVAVIKNDKIKGY
EEEECCCCCCCCCCEEHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEECCCEEEE
VSTEQANSIQLINKRFKGGTRTIIRDGSPLDYSIENNERKISIRDKKKLSVDIKLNLEGQ
EECCCCCHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEEEECCCEEEEEEEEEEECE
IKGYNIDKQISSNEGNIKKIEANLNKAITQDIKEVIRISQTEYNTDILDLGEFIHKYHPK
EECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHH
LWKEIKGNWNELYKTVDINVSVDTKVRRIGAIE
HHHHHCCCHHHEEEEEEEEEEECCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]