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The map label for this gene is gerKA [H]

Identifier: 226947346

GI number: 226947346

Start: 153578

End: 155098

Strand: Direct

Name: gerKA [H]

Synonym: CLM_0166

Alternate gene names: 226947346

Gene position: 153578-155098 (Clockwise)

Preceding gene: 226947345

Following gene: 226947347

Centisome position: 3.7

GC content: 29.65

Gene sequence:

>1521_bases
ATGAAGGAAGTAGTTAATGATGAAATAAGTAAAAGTATAGATGAAAATATAAAATATATAAAAGAATTACTGGAAGGTAA
TTCTGATATGGTTTTTAGGGAATTTTTAATAGGAGATAAGAAAGCTTTTATAATGTACATAGATGGTATGGCAGACAAAG
ATTTATTGAATGACTATGTTTTAGAATCTCTTATGTTGGAATCAGAAAAATTAGGTAATATAAGTGATATCAAAAATAGA
ATTTTAAATAAAAGATATGAGTCTAATGATAAATGTAATGTAAATAATATTAAAAATAAGATATTAACGGTAACAGATGT
ATCAGAGAAAGACAAATTAAGTAAAGCCATAGACCTAGTATTATCAGGAGATACTTTACTATTAATAGATGGCATGGACA
AAGCTTATGTAATAGCTACAAGACTTTGGCCTGTTAGGGGGATTGGGGAACCGGAGTCAGAAACAACAATAAAAGGAAGT
AGAGATGGGTTTACAGAAACTATAAGATTTAATACTGCATTGGTTAGAAGAAGAATAAAAGATACGAGGTTAAAGATAAA
ATCTAAAACGTTAGGAGTAAGATCTAAAACAGATATGGCCATTATATACATAGAAGATATTGTAAACCAGGATGTTTTAA
ATAATATATATGATAGATTAGAAAAAATAGATATTGATGCCATATTGGGAAGCGGATATATAGAGCATCTTATAGAAGAT
GGTAAATGGTCTCTTTTCCCAACTACTAGAAGTACAGAGAGACCAGATGTAGTAGCTTCAGCTTTATATGAAGGGAAAGT
AGCTATTTTAGTTGATAATTCGCCTTTTGCCATTATAGTTCCTACTACCTTACCAAGTTTGTTTCAGTCTCCAGATGATT
ACTACGAAAAATGGATACATTCATCAATAATAAGAATAATAAGATTATTTTCAATAATTATTAGTATTATATTGCCCTCC
ATGTATGTAGCTGTAACTTCGTATCATAGCGACATAATACCAACTAAGTTAGCTTATTTTATAGCTGCATCTAGAGAAGG
GGTGCCCTTTCCAGCTTATATGGAGGCATTAATAATGGAATTTAGCTTAGCATTTTTAATGGAATCTCTAATTAGATTAC
CAAAACCCATAGGGGCTACTATAGGCATTGTGGGTGGTTTAATAATAGGTCAGGCAGCGGTATCAGCAGGTATTGTAAGC
CCCATAATGATTATAATTGTTTCTATAACCACTATAACAAGTTTCACAGCCCCAAGTTATGATGCAAGTCTTTCTTTTAG
AATAATTAGATTTTTATTAATTATAGCAGCATCATTTTTAGGATTATATGGAATAATTTTAGGATTGATAGTATTGTTAA
TACATTTAGTAAGATTAAAAAGTTTTGGTATACCTTATTTATCACCTATTGTTAATCCAAGTATCAGTGATTTCAAAGAT
ATGTATATAAGAGCACCTATAAGATTTTTTAAGAAAAGACCAGATTACATGAAAACTAGAGATAAAATAAGACAAAGATA
A

Upstream 100 bases:

>100_bases
AAGTTTAATATTATATATTCTGCAAAGAATATTGTTTTAAAATAGTATATTTCTTAAAATGTAGTATTTTTTTAGGTTAG
TTCTAAAGGGAGTGTATAAG

Downstream 100 bases:

>100_bases
AGTAGATTTGGAGGAATTAATGGTGAGGGATGAGAACTTTGTAACATCTTATAGTTTGTTTGCTACTATTGTAACTAGTG
TTATTGGAGTAAGTGTATTT

Product: spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYVLESLMLESEKLGNISDIKNR
ILNKRYESNDKCNVNNIKNKILTVTDVSEKDKLSKAIDLVLSGDTLLLIDGMDKAYVIATRLWPVRGIGEPESETTIKGS
RDGFTETIRFNTALVRRRIKDTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIHSSIIRIIRLFSIIISIILPS
MYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIMEFSLAFLMESLIRLPKPIGATIGIVGGLIIGQAAVSAGIVS
PIMIIIVSITTITSFTAPSYDASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPIVNPSISDFKD
MYIRAPIRFFKKRPDYMKTRDKIRQR

Sequences:

>Translated_506_residues
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYVLESLMLESEKLGNISDIKNR
ILNKRYESNDKCNVNNIKNKILTVTDVSEKDKLSKAIDLVLSGDTLLLIDGMDKAYVIATRLWPVRGIGEPESETTIKGS
RDGFTETIRFNTALVRRRIKDTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIHSSIIRIIRLFSIIISIILPS
MYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIMEFSLAFLMESLIRLPKPIGATIGIVGGLIIGQAAVSAGIVS
PIMIIIVSITTITSFTAPSYDASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPIVNPSISDFKD
MYIRAPIRFFKKRPDYMKTRDKIRQR
>Mature_506_residues
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYVLESLMLESEKLGNISDIKNR
ILNKRYESNDKCNVNNIKNKILTVTDVSEKDKLSKAIDLVLSGDTLLLIDGMDKAYVIATRLWPVRGIGEPESETTIKGS
RDGFTETIRFNTALVRRRIKDTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIHSSIIRIIRLFSIIISIILPS
MYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIMEFSLAFLMESLIRLPKPIGATIGIVGGLIIGQAAVSAGIVS
PIMIIIVSITTITSFTAPSYDASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPIVNPSISDFKD
MYIRAPIRFFKKRPDYMKTRDKIRQR

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 57036; Mature: 57036

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LESLMLESEKLGNISDIKNRILNKRYESNDKCNVNNIKNKILTVTDVSEKDKLSKAIDLV
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHE
LSGDTLLLIDGMDKAYVIATRLWPVRGIGEPESETTIKGSRDGFTETIRFNTALVRRRIK
ECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
DTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
HHHHEEHHHHCCCCCCCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIH
CCEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHHHH
SSIIRIIRLFSIIISIILPSMYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FSLAFLMESLIRLPKPIGATIGIVGGLIIGQAAVSAGIVSPIMIIIVSITTITSFTAPSY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPIVNPSISDFKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHH
MYIRAPIRFFKKRPDYMKTRDKIRQR
HHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKEVVNDEISKSIDENIKYIKELLEGNSDMVFREFLIGDKKAFIMYIDGMADKDLLNDYV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LESLMLESEKLGNISDIKNRILNKRYESNDKCNVNNIKNKILTVTDVSEKDKLSKAIDLV
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHE
LSGDTLLLIDGMDKAYVIATRLWPVRGIGEPESETTIKGSRDGFTETIRFNTALVRRRIK
ECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
DTRLKIKSKTLGVRSKTDMAIIYIEDIVNQDVLNNIYDRLEKIDIDAILGSGYIEHLIED
HHHHEEHHHHCCCCCCCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GKWSLFPTTRSTERPDVVASALYEGKVAILVDNSPFAIIVPTTLPSLFQSPDDYYEKWIH
CCEEEECCCCCCCCCHHHHHHHHCCEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHHHH
SSIIRIIRLFSIIISIILPSMYVAVTSYHSDIIPTKLAYFIAASREGVPFPAYMEALIME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FSLAFLMESLIRLPKPIGATIGIVGGLIIGQAAVSAGIVSPIMIIIVSITTITSFTAPSY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DASLSFRIIRFLLIIAASFLGLYGIILGLIVLLIHLVRLKSFGIPYLSPIVNPSISDFKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHH
MYIRAPIRFFKKRPDYMKTRDKIRQR
HHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]