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The map label for this gene is 226947340

Identifier: 226947340

GI number: 226947340

Start: 146861

End: 148423

Strand: Direct

Name: 226947340

Synonym: CLM_0160

Alternate gene names: NA

Gene position: 146861-148423 (Clockwise)

Preceding gene: 226947339

Following gene: 226947341

Centisome position: 3.53

GC content: 28.73

Gene sequence:

>1563_bases
ATGGACTTGAATTTACTTAAAGAAAATATAGAATGTGAGCAATTACTCGGAGAAAATTTTGTTAATACCCCTGTAAAGGG
GGAGTATGTTATTCCAGATACTCATCCAGATGTTTATGAAGTACTTATGTTAGACGCTAAACCTTATATAACAAGTAAGG
AAGTTATGCAAGATAAACTTTATATGGAAGGATATATAGATTACAACATATTATATCTTGCAAAAGAAGAAGAAAAAGGC
GTTTTATATAATACTAGATATAGTAGTAAATTTTCAAATGATATACAGATATCTGGTACAGAAAAAGAAATGTTATGCGA
AGCAGAATGTTTTGTTGAGGATATGTATTGCAAAATAGTTAACGAAAGGAAAATATCTATAGAAGGTATAGTTAGATTGA
AAGGAGCAGTTTATAAAAAATATAATTTTGAGATAATAAAAGATCTAGATGCACTTCAGGATATACAAATGCTTAGAAAT
CCAATCTCCATCGATAAAATAGCAGGTACGGCTACAGGGGAACTTTTGGTGAAAACTAGCGTAAAAATAGGAGCTGATAA
GCCAGAGATAGGTAGTATATTAAAGACTAATTTGAATATTCATAAAAAGAAAATAACTGTATTAGATGATAAAGTAAATG
TAGAGGCTTTTGCTAAAATAGAATTAATATATAGGGCTAAGGAAAGTAGAGATATTTGCTATGTAGTGGATGATATATTT
ATAGATAAAGAAGTAGAATTAAAGGGTGTAAACTCCTTCATGGAAAGTTATACGGATTTCACTGTAGATGGAATAAATAC
AGAACCGAAAGAAGATGATTTAGGAGAAAGTAGAATTATAGACGTAGAAGCACTTGTTAAATCTAATACGAGAGTTATGT
ATAAAAAAGAAATAGAAGTTATAGAAGATATGTATTCACCTAATATGTTGCTAAATATGAATAAAGAGGACTATGAATTA
AATGTCATGCAAGGACATTCTAAAAATGAAAGTATAGTTAAGGAGAATATAGAAATAACATCTAGTATGCCTAGTATAAG
AGAAATAATAATGACAGAAGGAAAGGCATATATAACAGAGAAAAAAATAGTAGAAGATAAGGTAGTTGTAGAAGGAATTT
TAAATGCAGAAGTTATGTATAAAACTACAGAGGATGGGAAGTATATTTATAATTTAAAAGAAGACATACCCTTTAGTTGT
GCTGTAGATATACCAGGAGCCAAAATAGATATGCAATGCATGACAAAGGTAGTATTAGAAGATGTAGAAGCTAATATAGA
AGCCAATACTGTAGCTGTAAAAGCTTTAATAGAAGTATATTCAAGAGTTAATTATACATCACATAAAGAATTTTTAGTAA
ATGTAGAACCAATGGAAGAAGAAGTTCCTGAAAAAAAATCTAGTATAACAATATATGTAGTGCAGCAAGGAGATACTCTT
TGGAAAATAGCAAAAAGATATTATACCACAGTAGATAATTTAGTATTAATTAATGAAATTGACAATCCTGATGTTATAAA
ACCAGGACAAAAATTAATAATACCAGGAAAAGCTATTATATAA

Upstream 100 bases:

>100_bases
GATTGGTACTTAATAAGTACCAATTTTTTTTTTTTTATGCATAATTTCTCCAAAACTACTATATAAATTATTAGTAGGTT
TTATGGGAGGGATAAGTTAA

Downstream 100 bases:

>100_bases
TTTAGACATAAAATGAAACTTAACTTAGATTGAATTTTTTCTTTAAAGGACAAACAGAGTTCTAAGCTTCAGAGGGAGTT
TTTATCCCCTCTGAAGCTTA

Product: LysM domain-containing protein

Products: NA

Alternate protein names: LysM Domain Protein; Spore Coat Assembly Protein SafA; Cell Wall Hydrolase

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MDLNLLKENIECEQLLGENFVNTPVKGEYVIPDTHPDVYEVLMLDAKPYITSKEVMQDKLYMEGYIDYNILYLAKEEEKG
VLYNTRYSSKFSNDIQISGTEKEMLCEAECFVEDMYCKIVNERKISIEGIVRLKGAVYKKYNFEIIKDLDALQDIQMLRN
PISIDKIAGTATGELLVKTSVKIGADKPEIGSILKTNLNIHKKKITVLDDKVNVEAFAKIELIYRAKESRDICYVVDDIF
IDKEVELKGVNSFMESYTDFTVDGINTEPKEDDLGESRIIDVEALVKSNTRVMYKKEIEVIEDMYSPNMLLNMNKEDYEL
NVMQGHSKNESIVKENIEITSSMPSIREIIMTEGKAYITEKKIVEDKVVVEGILNAEVMYKTTEDGKYIYNLKEDIPFSC
AVDIPGAKIDMQCMTKVVLEDVEANIEANTVAVKALIEVYSRVNYTSHKEFLVNVEPMEEEVPEKKSSITIYVVQQGDTL
WKIAKRYYTTVDNLVLINEIDNPDVIKPGQKLIIPGKAII

Sequences:

>Translated_520_residues
MDLNLLKENIECEQLLGENFVNTPVKGEYVIPDTHPDVYEVLMLDAKPYITSKEVMQDKLYMEGYIDYNILYLAKEEEKG
VLYNTRYSSKFSNDIQISGTEKEMLCEAECFVEDMYCKIVNERKISIEGIVRLKGAVYKKYNFEIIKDLDALQDIQMLRN
PISIDKIAGTATGELLVKTSVKIGADKPEIGSILKTNLNIHKKKITVLDDKVNVEAFAKIELIYRAKESRDICYVVDDIF
IDKEVELKGVNSFMESYTDFTVDGINTEPKEDDLGESRIIDVEALVKSNTRVMYKKEIEVIEDMYSPNMLLNMNKEDYEL
NVMQGHSKNESIVKENIEITSSMPSIREIIMTEGKAYITEKKIVEDKVVVEGILNAEVMYKTTEDGKYIYNLKEDIPFSC
AVDIPGAKIDMQCMTKVVLEDVEANIEANTVAVKALIEVYSRVNYTSHKEFLVNVEPMEEEVPEKKSSITIYVVQQGDTL
WKIAKRYYTTVDNLVLINEIDNPDVIKPGQKLIIPGKAII
>Mature_520_residues
MDLNLLKENIECEQLLGENFVNTPVKGEYVIPDTHPDVYEVLMLDAKPYITSKEVMQDKLYMEGYIDYNILYLAKEEEKG
VLYNTRYSSKFSNDIQISGTEKEMLCEAECFVEDMYCKIVNERKISIEGIVRLKGAVYKKYNFEIIKDLDALQDIQMLRN
PISIDKIAGTATGELLVKTSVKIGADKPEIGSILKTNLNIHKKKITVLDDKVNVEAFAKIELIYRAKESRDICYVVDDIF
IDKEVELKGVNSFMESYTDFTVDGINTEPKEDDLGESRIIDVEALVKSNTRVMYKKEIEVIEDMYSPNMLLNMNKEDYEL
NVMQGHSKNESIVKENIEITSSMPSIREIIMTEGKAYITEKKIVEDKVVVEGILNAEVMYKTTEDGKYIYNLKEDIPFSC
AVDIPGAKIDMQCMTKVVLEDVEANIEANTVAVKALIEVYSRVNYTSHKEFLVNVEPMEEEVPEKKSSITIYVVQQGDTL
WKIAKRYYTTVDNLVLINEIDNPDVIKPGQKLIIPGKAII

Specific function: Unknown

COG id: COG1388

COG function: function code M; FOG: LysM repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59381; Mature: 59381

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNLLKENIECEQLLGENFVNTPVKGEYVIPDTHPDVYEVLMLDAKPYITSKEVMQDKL
CCHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHH
YMEGYIDYNILYLAKEEEKGVLYNTRYSSKFSNDIQISGTEKEMLCEAECFVEDMYCKIV
HEEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
NERKISIEGIVRLKGAVYKKYNFEIIKDLDALQDIQMLRNPISIDKIAGTATGELLVKTS
CCCEEEEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEE
VKIGADKPEIGSILKTNLNIHKKKITVLDDKVNVEAFAKIELIYRAKESRDICYVVDDIF
EEECCCCCHHHHHHHCCCEEEEEEEEEEECCCCHHHEEEEEEEEECCCCCCEEEEEEEEE
IDKEVELKGVNSFMESYTDFTVDGINTEPKEDDLGESRIIDVEALVKSNTRVMYKKEIEV
ECCCEEEHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEHHHHHCCCCEEEEHHHHHH
IEDMYSPNMLLNMNKEDYELNVMQGHSKNESIVKENIEITSSMPSIREIIMTEGKAYITE
HHHHCCCCEEEECCCCCEEEEEEECCCCCCCHHHHCCEEECCCHHHHHHHHCCCCEEEEH
KKIVEDKVVVEGILNAEVMYKTTEDGKYIYNLKEDIPFSCAVDIPGAKIDMQCMTKVVLE
HHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHH
DVEANIEANTVAVKALIEVYSRVNYTSHKEFLVNVEPMEEEVPEKKSSITIYVVQQGDTL
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCCCEEEEEEECCCHH
WKIAKRYYTTVDNLVLINEIDNPDVIKPGQKLIIPGKAII
HHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MDLNLLKENIECEQLLGENFVNTPVKGEYVIPDTHPDVYEVLMLDAKPYITSKEVMQDKL
CCHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHH
YMEGYIDYNILYLAKEEEKGVLYNTRYSSKFSNDIQISGTEKEMLCEAECFVEDMYCKIV
HEEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
NERKISIEGIVRLKGAVYKKYNFEIIKDLDALQDIQMLRNPISIDKIAGTATGELLVKTS
CCCEEEEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEE
VKIGADKPEIGSILKTNLNIHKKKITVLDDKVNVEAFAKIELIYRAKESRDICYVVDDIF
EEECCCCCHHHHHHHCCCEEEEEEEEEEECCCCHHHEEEEEEEEECCCCCCEEEEEEEEE
IDKEVELKGVNSFMESYTDFTVDGINTEPKEDDLGESRIIDVEALVKSNTRVMYKKEIEV
ECCCEEEHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEHHHHHCCCCEEEEHHHHHH
IEDMYSPNMLLNMNKEDYELNVMQGHSKNESIVKENIEITSSMPSIREIIMTEGKAYITE
HHHHCCCCEEEECCCCCEEEEEEECCCCCCCHHHHCCEEECCCHHHHHHHHCCCCEEEEH
KKIVEDKVVVEGILNAEVMYKTTEDGKYIYNLKEDIPFSCAVDIPGAKIDMQCMTKVVLE
HHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHH
DVEANIEANTVAVKALIEVYSRVNYTSHKEFLVNVEPMEEEVPEKKSSITIYVVQQGDTL
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCCCEEEEEEECCCHH
WKIAKRYYTTVDNLVLINEIDNPDVIKPGQKLIIPGKAII
HHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA