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The map label for this gene is udgA

Identifier: 226947298

GI number: 226947298

Start: 97850

End: 98422

Strand: Direct

Name: udgA

Synonym: CLM_0117

Alternate gene names: NA

Gene position: 97850-98422 (Clockwise)

Preceding gene: 226947296

Following gene: 226947299

Centisome position: 2.35

GC content: 31.06

Gene sequence:

>573_bases
GTGCTAAAGTGGTCTCAATTATATGATGAATGTATTAATTGTAATAAATGTACTTTAGTTAAAAATAGAACTAATATGGT
ATTTGGGGAAGGCAATATAAGTGCACCTATTATGTTTATAGGGGAAGCTCCAGGAGCAGATGAGGATAGGACAGGAAGAC
CTTTTGTGGGGAAAGCAGGGCAGTTACTTACTAAAGCATTGTTAGCATTAGATTTTAAAAGAGATGAACATTATTATATA
TGTAATGTGTGTAAATGTAGGCCAGAAAATAATAGAACTCCTAAAGAAGAAGAAGCTATGACTTGCTTACCTTATTTAAG
AAATCAAGTGGCATTGGTAAAGCCTAAAATTATGATTTGTTTAGGAGCTACTGCTTTAAAATATATTATGGGAGAACAAT
TTAGAATAACGAGAGATAGAGGTAAATGGATAGAAAGAAAGGGATATTATATTATGGCAACTTTTCATCCGGCGGCTTTA
TTTAGAGATGAGTCTAAGAAAAAATTATTGTGGCAAGACTTAAAATCTATTAGGGAAAAATATGATGAGTTAATTAAAAA
TAATATAATTTAG

Upstream 100 bases:

>100_bases
TATAGCATTAAATAAAGCAATATAGTTAATAAAGATATGTTTATATGGTAAAATTAAACTAGATATTTGGATATAATGTA
TAGAAATAGAGGTGAAAAAA

Downstream 100 bases:

>100_bases
AGTTAATATAAAGTGAAAGAGGATACAAATGGATAATATGGAATTATCAAAAGAACTTATAAAATTTATGATTACTATGA
AAAAACAAATTAAGGAATGT

Product: uracil-DNA glycosylase

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Polymerase-Related Protein; Uracil-DNA Glycosylase Family 4 Protein; Phage SPO1 DNA Polymerase Domain-Containing Protein; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; DNA Polymerase Domain-Containing Protein; Phage DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase-Like Protein; DNA Glycosylase; Uracil-DNA Glycosylase C-Terminal; Uracil-DNA Glycosylase-Related Protein; Phage SpO1 DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil DNA Glycosylase; Fis Family Transcriptional Regulator; DNA-Directed DNA Polymerase Bacteriophage-Type

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAGQLLTKALLALDFKRDEHYYI
CNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMICLGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAAL
FRDESKKKLLWQDLKSIREKYDELIKNNII

Sequences:

>Translated_190_residues
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAGQLLTKALLALDFKRDEHYYI
CNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMICLGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAAL
FRDESKKKLLWQDLKSIREKYDELIKNNII
>Mature_190_residues
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAGQLLTKALLALDFKRDEHYYI
CNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMICLGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAAL
FRDESKKKLLWQDLKSIREKYDELIKNNII

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 22051; Mature: 22051

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAG
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHH
QLLTKALLALDFKRDEHYYICNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMIC
HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCEEEEE
LGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAALFRDESKKKLLWQDLKSIREK
ECHHHHHHHHCCCEEEECCCCCEEECCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHH
YDELIKNNII
HHHHHHHCCC
>Mature Secondary Structure
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAG
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHH
QLLTKALLALDFKRDEHYYICNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMIC
HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCEEEEE
LGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAALFRDESKKKLLWQDLKSIREK
ECHHHHHHHHCCCEEEECCCCCEEECCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHH
YDELIKNNII
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA