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The map label for this gene is recR

Identifier: 226225254

GI number: 226225254

Start: 2747407

End: 2748003

Strand: Reverse

Name: recR

Synonym: Lm4b_02676

Alternate gene names: 226225254

Gene position: 2748003-2747407 (Counterclockwise)

Preceding gene: 226225255

Following gene: 226225253

Centisome position: 94.35

GC content: 39.53

Gene sequence:

>597_bases
ATGCATTATCCTGAGCCGATAACGAAATTAATAGATAGTTTTATGAAATTACCAGGAATTGGACCAAAATCGGCAGCTCG
ACTAGCTTTTTATGTGTTAGATATGAAAGAAGACGATGTGCTAGATTTTGCAAAAGCCCTTGTTGATGCGAAGCGAAACC
TAAGCTTTTGTTCCGTTTGTGGTCACATTACAGATAAGGATCCATGTTATATTTGCGCTGATACGTCACGCGATCGAAGT
GTTATCTGTGTAGTACAAGAATCCAAAGATGTCATTGCAATGGAAAAAATGCGTGATTTTCATGGCTTATACCATGTACT
TCATGGAACAATTTCGCCAATGGATGGAATTGGACCAGAAGATATTAACATTCCTGATTTGCTGAAACGTTTGCAAGATG
ACACAATTGAAGAAGTTATTTTAGCAACCAACCCTAATGTTGAAGGAGAAGCCACGGCGATGTATATTTCGCGCTTATTA
AAACCTTCAGGCATAAAAGTAACTAGAATAGCGCATGGCCTTCCAGTTGGCGGAGACTTGGAATATGCGGATGAAGTGAC
GCTCTCAAAAGCAATGGAAGGACGAAGAGAAGTATAA

Upstream 100 bases:

>100_bases
GGTTTGAGACTCTTGGCTTATTTACAAGAGTCTCAACTATTTTTCAATAGAATGTTCCACGTGAAACATTTGTATTTTGA
AGGTGAGAGGAAGACGAATT

Downstream 100 bases:

>100_bases
TCAGAGGTGATAAAATGGAATCCAGAAGCAATAAGTTTGGTCGGAAGAAAAACAAGAAGATTGGTAAACTACACAAATCC
TATGATGCTTATCTGATGGA

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRS
VICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLL
KPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV

Sequences:

>Translated_198_residues
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRS
VICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLL
KPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>Mature_198_residues
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRS
VICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLL
KPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

Organism=Escherichia coli, GI1786678, Length=193, Percent_Identity=44.559585492228, Blast_Score=175, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967 [H]

Pfam domain/function: PF02132 RecR; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21935; Mature: 21935

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVC
CCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHH
GHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPE
CCCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDL
CCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEHHCCCCCCCCC
EYADEVTLSKAMEGRREV
CHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVC
CCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHH
GHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPE
CCCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDL
CCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEHHCCCCCCCCC
EYADEVTLSKAMEGRREV
CHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]