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The map label for this gene is isdC [H]

Identifier: 226224794

GI number: 226224794

Start: 2280069

End: 2280695

Strand: Reverse

Name: isdC [H]

Synonym: Lm4b_02213

Alternate gene names: 226224794

Gene position: 2280695-2280069 (Counterclockwise)

Preceding gene: 226224795

Following gene: 226224793

Centisome position: 78.3

GC content: 37.48

Gene sequence:

>627_bases
ATGAAGAAAGTTTTAGTTTTGGCTGCTTTTATTGCCTTATTCAGTTTTTCGTTTCTTTCTACGGGATTAACGGCACAAGC
TGCTCTTAAGGATGGCACCTATTCGGTTGATTATACGGTACTACAAGGGGATAGTGATTCCGTATCTATGGCGAATGACT
ATTTTGATAAGCCTGCAACGGTAACTGTAAATGGAGGTAAATCTACTGTTAGTTTGCAAGTGAACCATAGTAAGTGGATT
ACTGGTTTATGGGTCGAAGGTAGTGCGGTTAGCGTGACTTCGAAAAATACAGCGAATGATACTCGAAAAGTGTCGTTTCC
TGTGTCGACTTTAAGTAGTCCTGTTAATGCAAAAATCAAAGTAGATATTGATGATGACGATTTAAATTATCATCATGAGT
ATCAAATCAAGTTACGTTTTGATGAAGGTTCTGCTAAAGCATTAGCTGGCGCGGTAAAGTCTTCTGATAATAACGATACA
GCAACCCCAGCAACAAAAAGTGACTCAAGTAATAAAGTAGCAAATCCGAAGTCTAGTGATTCTAGCCAAATGTTTTTATA
TGGAATTATTTTTGTTGCAGCAGGGGCAGGGTTAGTTTTACTTAAAAGACGTGCGATTTTTAAATAA

Upstream 100 bases:

>100_bases
ATGATAATTAACGTATCCTTTTACATAAACTTTTACTCCACTTTTATTAGTGGGGGTTTTTTATAAATAGTAGTTTTTAT
TAAAGAAGGGAGATTTAAGT

Downstream 100 bases:

>100_bases
AGGGGGATTATGATGAAGAAATTATGGAAAAAAGGTTTAGTAGCTTTCTTGGCTTTGACACTTATTTTTCAATTGATACC
TGGTTTTGCTAATGCGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Staphylococcal iron-regulated protein D [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGDSDSVSMANDYFDKPATVTVNGGKSTVSLQVNHSKWI
TGLWVEGSAVSVTSKNTANDTRKVSFPVSTLSSPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDT
ATPATKSDSSNKVANPKSSDSSQMFLYGIIFVAAGAGLVLLKRRAIFK

Sequences:

>Translated_208_residues
MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGDSDSVSMANDYFDKPATVTVNGGKSTVSLQVNHSKWI
TGLWVEGSAVSVTSKNTANDTRKVSFPVSTLSSPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDT
ATPATKSDSSNKVANPKSSDSSQMFLYGIIFVAAGAGLVLLKRRAIFK
>Mature_208_residues
MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGDSDSVSMANDYFDKPATVTVNGGKSTVSLQVNHSKWI
TGLWVEGSAVSVTSKNTANDTRKVSFPVSTLSSPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDT
ATPATKSDSSNKVANPKSSDSSQMFLYGIIFVAAGAGLVLLKRRAIFK

Specific function: Involved in heme (porphyrin) scavenging. Binds hemoglobin and almost exclusively free-base protoporphyrin IX. Probably has a role as the central conduit of the isd heme uptake system, i.e., mediates the transfer of the iron-containing nutrient from isdABH

COG id: COG5386

COG function: function code M; Cell surface protein

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 NEAT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019909
- InterPro:   IPR006635
- InterPro:   IPR017505 [H]

Pfam domain/function: PF05031 NEAT [H]

EC number: NA

Molecular weight: Translated: 22231; Mature: 22231

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50978 NEAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGDSDSVSMANDYFDKPAT
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEHHHHCCCCCE
VTVNGGKSTVSLQVNHSKWITGLWVEGSAVSVTSKNTANDTRKVSFPVSTLSSPVNAKIK
EEECCCCEEEEEEEECCCEEEEEEECCCEEEEECCCCCCCCEEEEECHHHCCCCCCCEEE
VDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDTATPATKSDSSNKVANPKSSD
EEECCCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSQMFLYGIIFVAAGAGLVLLKRRAIFK
CCCCHHHHHHHHHCCCCEEEEEHHHHCC
>Mature Secondary Structure
MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGDSDSVSMANDYFDKPAT
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEHHHHCCCCCE
VTVNGGKSTVSLQVNHSKWITGLWVEGSAVSVTSKNTANDTRKVSFPVSTLSSPVNAKIK
EEECCCCEEEEEEEECCCEEEEEEECCCEEEEECCCCCCCCEEEEECHHHCCCCCCCEEE
VDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDTATPATKSDSSNKVANPKSSD
EEECCCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSQMFLYGIIFVAAGAGLVLLKRRAIFK
CCCCHHHHHHHHHCCCCEEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA