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The map label for this gene is yvoA [H]

Identifier: 226224751

GI number: 226224751

Start: 2230252

End: 2230986

Strand: Reverse

Name: yvoA [H]

Synonym: Lm4b_02169

Alternate gene names: 226224751

Gene position: 2230986-2230252 (Counterclockwise)

Preceding gene: 226224752

Following gene: 226224749

Centisome position: 76.6

GC content: 37.55

Gene sequence:

>735_bases
ATGGTGAGAAAGTTAAATAAAATGTACGATGCATCTCCGCTCTATGCGCAAATAGCTGATGATTTACGAGAAAAAATCCA
AACAGAAGTTTGGCAAACTGGAGATAAAATTCCACCAGAGCTTGATTTATGTGAGTTATACAATGTCAGTAGAATTACCG
TTCGAAAAGCAATTGATGAACTCGTTCGTGAGAATTTACTTTATAGAGAGCGCGCGAAAGGTACTTTTGTACGTGACTGG
GAAGAAGCAGAGGATGAGCATTTTACGTTAGTGCGCAGTTTTACGAATGAGATGAAAGAACTTGGTAAAAAGGCGGCTAC
GCTACATGCGGAAGTAGAAGTGATCAATGCCGATAAAAAAATTGCGTTACAGCTAGGGCTTTCTGTCGGGGACAAGGTGC
TACAAATTAAGCGGCTACGCGGTACGAAAGACTTGGCATTTGCTTTATTTATCAGTTTTATTCCTTATAATCAAGATTAC
TCACTTAAAGCAGAAGATTATTACGGTTCTTTTTATGAATATTTGAAAGGCTTCGGTATTGTCGTGAATCAAGAAAAGGA
ATATATTGAAGCGATGTTGCCTAATCGTGAAGTACAGGAAGCGCTCGCAATCGACAAACAAGAACCAATTTTGAAAAGGG
TGCGGATGACGAAACAAAAAGAAAGTGATTTTAGAGAATACAGCGAATGTTTTTATATAGGAAAGCATTATCGCTATTAT
ATTGATTTTGAATAA

Upstream 100 bases:

>100_bases
TAGGGCTTAATAGCTCTACTTTTTATATTGGAATTTTGGATAAGCTTATGCTATGATTCATTGTGATGACAATAATACAA
TTTGAGAAGGAAGGCTTACT

Downstream 100 bases:

>100_bases
AAGAAAGCCTATCAAAAATATTGATAGGCATTTCTTTTTTATAAATTACGTACAAAAGCTTGAATAACAGCCACTTCTTC
ATTATCGCTCGTATTTCTGA

Product: transcription regulator GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MVRKLNKMYDASPLYAQIADDLREKIQTEVWQTGDKIPPELDLCELYNVSRITVRKAIDELVRENLLYRERAKGTFVRDW
EEAEDEHFTLVRSFTNEMKELGKKAATLHAEVEVINADKKIALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDY
SLKAEDYYGSFYEYLKGFGIVVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTKQKESDFREYSECFYIGKHYRYY
IDFE

Sequences:

>Translated_244_residues
MVRKLNKMYDASPLYAQIADDLREKIQTEVWQTGDKIPPELDLCELYNVSRITVRKAIDELVRENLLYRERAKGTFVRDW
EEAEDEHFTLVRSFTNEMKELGKKAATLHAEVEVINADKKIALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDY
SLKAEDYYGSFYEYLKGFGIVVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTKQKESDFREYSECFYIGKHYRYY
IDFE
>Mature_244_residues
MVRKLNKMYDASPLYAQIADDLREKIQTEVWQTGDKIPPELDLCELYNVSRITVRKAIDELVRENLLYRERAKGTFVRDW
EEAEDEHFTLVRSFTNEMKELGKKAATLHAEVEVINADKKIALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDY
SLKAEDYYGSFYEYLKGFGIVVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTKQKESDFREYSECFYIGKHYRYY
IDFE

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=225, Percent_Identity=28.8888888888889, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=30.0429184549356, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790118, Length=229, Percent_Identity=24.8908296943231, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI87082252, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28803; Mature: 28803

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKLNKMYDASPLYAQIADDLREKIQTEVWQTGDKIPPELDLCELYNVSRITVRKAIDE
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHH
LVRENLLYRERAKGTFVRDWEEAEDEHFTLVRSFTNEMKELGKKAATLHAEVEVINADKK
HHHHHHHHHHHCCCCCEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCE
IALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDYSLKAEDYYGSFYEYLKGFGI
EEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCE
VVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTKQKESDFREYSECFYIGKHYRYY
EECCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEE
IDFE
EECC
>Mature Secondary Structure
MVRKLNKMYDASPLYAQIADDLREKIQTEVWQTGDKIPPELDLCELYNVSRITVRKAIDE
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHH
LVRENLLYRERAKGTFVRDWEEAEDEHFTLVRSFTNEMKELGKKAATLHAEVEVINADKK
HHHHHHHHHHHCCCCCEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCE
IALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDYSLKAEDYYGSFYEYLKGFGI
EEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCE
VVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTKQKESDFREYSECFYIGKHYRYY
EECCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEE
IDFE
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]