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The map label for this gene is ylmE [H]

Identifier: 226224637

GI number: 226224637

Start: 2111319

End: 2112008

Strand: Reverse

Name: ylmE [H]

Synonym: Lm4b_02052

Alternate gene names: 226224637

Gene position: 2112008-2111319 (Counterclockwise)

Preceding gene: 226224638

Following gene: 226224636

Centisome position: 72.51

GC content: 37.54

Gene sequence:

>690_bases
ATGACAAAACAAGCTAATTTACAAAAAGTAACGGCACAAATAGAGCGTGCCTGTGAAGAAAGTAATCGTCAGCCGGAAGA
TGTAACGTTAGTAGCTGTTACAAAAACGATTGATGTAGCTGGAATCACAGAGCTTTATGATTTAGGTATCCGTCACTTTG
GTGAAAATCGTGCAGACGTTTTCCAAGAAAAAACAGTAGCACTTGCAGATAAAGAAGACATTTGTTGGCATTACATTGGT
TCTTTACAAACACGTAAAGTAAAAGATGTTTTACCAAAAATCGATTATTTGCATTCGCTTGACCGATCATCGCTAGCAAA
GGAAATCGAAAAGCGAGCTACTAAACAAGTGAAATGTTTCCTTCAAGTGAATATTTCTGGTGAGGAAAGCAAACATGGTT
TTTCCAAAGAAGAGGCGCTATCTTTTTTACAAGAAGCGAATTTTACGTTCATTGAGATTGTTGGTTTAATGACAATGGCA
CCTATTACAAATAGCGACATAGAGCTGCATCACGTATTTCATGAGTTAAAGCAATTGCAGCAAGAAATTCATGCGCTTCA
GTTAAACAACATTCCATGTACAGAGTTATCTATGGGGATGACGAATGATTATGGAGTTGCAATTACGGAAGGTGCAACAT
TTATACGAGTAGGAAGAGCTTTGGTGAGTGACGATAATATGGAGGTGTAA

Upstream 100 bases:

>100_bases
ACCCGGCCACTTTTGAAGCATTGCCAAGTGACCGGGTATCTGATTATAACAAGAAGCGTTTTAAATAAAGCACTTCGGGA
ATTATATAAGGTGATAAAAA

Downstream 100 bases:

>100_bases
CAAATGGGACTATCGAATAAATTTAAGTCATTCTTTTTCTTAGATGAAGAAGAGGAATATTACGAAGAGGAAGTAGCGAG
GGAACCAGAACCTATGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADVFQEKTVALADKEDICWHYIG
SLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATKQVKCFLQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMA
PITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSDDNMEV

Sequences:

>Translated_229_residues
MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADVFQEKTVALADKEDICWHYIG
SLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATKQVKCFLQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMA
PITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSDDNMEV
>Mature_228_residues
TKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADVFQEKTVALADKEDICWHYIGS
LQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATKQVKCFLQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMAP
ITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSDDNMEV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=236, Percent_Identity=32.2033898305085, Blast_Score=99, Evalue=4e-21,
Organism=Escherichia coli, GI1789321, Length=231, Percent_Identity=31.1688311688312, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17533025, Length=204, Percent_Identity=32.3529411764706, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=211, Percent_Identity=32.7014218009479, Blast_Score=96, Evalue=5e-21,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=29.5081967213115, Blast_Score=99, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25823; Mature: 25692

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHCHHHHHHHHHHHHHHCCCCHHHH
FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATKQVKCF
HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEE
LQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMAPITNSDIELHHVFHELKQLQ
EEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
QEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSDDNMEV
HHHHHHHCCCCCCCHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHCHHHHHHHHHHHHHHCCCCHHHH
FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATKQVKCF
HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEE
LQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMAPITNSDIELHHVFHELKQLQ
EEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
QEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSDDNMEV
HHHHHHHCCCCCCCHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]