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The map label for this gene is agaC [H]

Identifier: 226224599

GI number: 226224599

Start: 2062826

End: 2063644

Strand: Reverse

Name: agaC [H]

Synonym: Lm4b_02013

Alternate gene names: 226224599

Gene position: 2063644-2062826 (Counterclockwise)

Preceding gene: 226224600

Following gene: 226224598

Centisome position: 70.85

GC content: 40.42

Gene sequence:

>819_bases
ATGGAACAGTTTGGAACAGCGATTTTGCTTGCACTTGCAGCAATGCTTGCAAATGGAGAATATTTATTTGGTTCATCGAT
GCTATCAAGACCACTGGTAACATGTACACTCGCCGGACTTATCATGGGTGATGTACAAATGGGGATTATTATGGGAGCAA
CTTTGGAATTAGCTTTTGTAGGATCATTTTCTATCGGAGCATCTATTCCTCCAGAAATTATTTCAGGAAGTATACTAGGA
ACAGCCTTTGCGATTTCGACTGGCGAGAGCACAGCGGTAGCATTAGCACTTGGAATTCCGATTGCTTCCCTTGTACTTGT
CGTTAAAAATCTATGCTTCATTTTCGTATTACCTTACTTTGTTCATAAAGCAGATAAATACGCACTCGAGGGTAATTCAC
GAGGAATCAGTCGAATGCAACTGCTCGGCGGATTTTTATCGATCAACTTACCAATTGGTATTATTGTCGCAACGTCCTAT
CTAGTCGGAAGCCCAGTCATCCAAAACGTACTTGATGCCATCCCGGCTTTCGTTATAACAGGACTTGGAATTGCGACAGG
TTTACTGCCAGCATATGGTTTTGCTTTACTTCTCAAATTAATGGTCAATAAGAAGAATGCCGTATTTTTCGTATTTGGCT
TCGCATTAGCTGTTTATTTAAAAGTTCCTGTAACAGGCGTAGCGATTTTCGCTGCATGTTTAGCGCTAATTTTAACAGGT
TATGCAACGCTTAAAAATGACAATGGTCCAAAGAATTCGAATACAGAGCCAGCACTTGCGAATGATGGAGGTATAAATTA
TGAAGATGAAGAGTTCTGA

Upstream 100 bases:

>100_bases
AAAGAACTTCAAAAAGAAAATGTAGATGTATTTATGCAACAAGTGCCTAACGAGAAAAAAGTAACCTTTGAAGCATAAAA
GACGAAAGAAGGGATAAATT

Downstream 100 bases:

>100_bases
CGTATTAACAAAAAAAGACTTAATGAAAGTTTTCTGGCGCTCGTTCACGATGGAATGGTCATGGAACTACGAACGACAAT
CCAATCTCGGTTATGGATTT

Product: PTS mannose-specific enzyme IIC component

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGDVQMGIIMGATLELAFVGSFSIGASIPPEIISGSILG
TAFAISTGESTAVALALGIPIASLVLVVKNLCFIFVLPYFVHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSY
LVGSPVIQNVLDAIPAFVITGLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAVYLKVPVTGVAIFAACLALILTG
YATLKNDNGPKNSNTEPALANDGGINYEDEEF

Sequences:

>Translated_272_residues
MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGDVQMGIIMGATLELAFVGSFSIGASIPPEIISGSILG
TAFAISTGESTAVALALGIPIASLVLVVKNLCFIFVLPYFVHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSY
LVGSPVIQNVLDAIPAFVITGLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAVYLKVPVTGVAIFAACLALILTG
YATLKNDNGPKNSNTEPALANDGGINYEDEEF
>Mature_272_residues
MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGDVQMGIIMGATLELAFVGSFSIGASIPPEIISGSILG
TAFAISTGESTAVALALGIPIASLVLVVKNLCFIFVLPYFVHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSY
LVGSPVIQNVLDAIPAFVITGLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAVYLKVPVTGVAIFAACLALILTG
YATLKNDNGPKNSNTEPALANDGGINYEDEEF

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=247, Percent_Identity=31.5789473684211, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788121, Length=251, Percent_Identity=33.0677290836653, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 28307; Mature: 28307

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGDVQMGIIMGATLELAFV
CCHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
GSFSIGASIPPEIISGSILGTAFAISTGESTAVALALGIPIASLVLVVKNLCFIFVLPYF
ECCCCCCCCCHHHHCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSYLVGSPVIQNVLDAIPAFVIT
HHHHHHEEECCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAVYLKVPVTGVAIFAACLALILTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YATLKNDNGPKNSNTEPALANDGGINYEDEEF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGDVQMGIIMGATLELAFV
CCHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
GSFSIGASIPPEIISGSILGTAFAISTGESTAVALALGIPIASLVLVVKNLCFIFVLPYF
ECCCCCCCCCHHHHCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSYLVGSPVIQNVLDAIPAFVIT
HHHHHHEEECCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAVYLKVPVTGVAIFAACLALILTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YATLKNDNGPKNSNTEPALANDGGINYEDEEF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]