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The map label for this gene is ypsC [H]

Identifier: 226224490

GI number: 226224490

Start: 1948361

End: 1949509

Strand: Reverse

Name: ypsC [H]

Synonym: Lm4b_01903

Alternate gene names: 226224490

Gene position: 1949509-1948361 (Counterclockwise)

Preceding gene: 226224491

Following gene: 226224489

Centisome position: 66.93

GC content: 41.6

Gene sequence:

>1149_bases
ATGAAATCATTTCAGTTGGTGGCAACGGCTGCTTCGGGTTTAGAGGCAATTGTTGGGAAAGAAGTAGCGCGTTTAGGCTA
TGACCCAAAAGTAGAAAACGGTAAAGTATATTTTGAAGGAGATTTATCTGCAATTGCTAGAGCCAATCTATGGCTTCGTG
TAGCTGACCGTGTGAAAATTGTGGTTGGTGTTTTTAAAGCAACGACATTTGATGAACTATTTGAAAAGACGAAAGCTTTA
CCTTGGGAAGATTATTTACCGCTTGATGCACAGTTTCCAGTGGCTGGTAAATCAGTTAAGTCAACACTTTATAGTGTGCC
TGATTGCCAAGCGATTGTAAAAAAAGCCATCGTTAACCGTGTCAGTGAAAAGTATCGTCGTTCTGGTCGTTTGATGGAAA
CAGGCGCGTTATTTAAGTTAGAAGTTTCTATTTTAAAAGATGAAGTGACGCTAACAATTGATACTAGTGGTGCGGGATTA
CATAAACGTGGTTACCGTTTAGCACAAGGTAGTGCGCCAATCAAAGAAACAATGGCGGCGGCACTTGTACTACTTACGAG
TTGGCATCCAGATAGACCATTTTATGATCCCGTTTGTGGTTCTGGAACAATTCCAATTGAGGCGGCACTAATTGGGCAAA
ATATTGCGCCTGGTTTTAACCGCGAGTTCGTGTCAGAAACATGGGATTGGATGCCGAAGCAAGTTTGGGCGGATGCGAGA
CAAGAAGCGGAAGATTTAGCTAACTATGATCAACCGCTAAATATTATTGGTGGCGATATTGATGCTCGTTTAATTGAAAT
CGCAAAGCAAAATGCGGTCGAAGCTGGCCTTGGTGACTTAATTACCTTTAGACAACTACAAGTAGCTGACTTTCAAACAG
AAGATGAGTACGGGGTCGTTGTTGCGAATCCACCATACGGGGAACGTTTAGAAGACGAGGAAGCAGTGCGCCAACTTTAC
CGCGAAATGGGTATTGTTTATAAACGCATGCCGACATGGTCAGTATATGTCCTTACCTCTTATGAACTTTTTGAAGAAGT
TTATGGTAAAAAAGCGACGAAAAAACGGAAATTATACAATGGTTACTTGCGCACAGATTTATATCAATACTGGGGTCCAA
GAAAACCACGTCCTAAAAAAGAAGATTGA

Upstream 100 bases:

>100_bases
TAAGGTGGGTGTTCGACCTGGTTGAATGCCTATTTAAAACAAACCTCCTCCTCTTAAAACAGCTTTTTTCATTAGAAATT
TAATTAAAGGATGGGAAACA

Downstream 100 bases:

>100_bases
TTGAATGGAGGAGTTAAGTTTGGTAGAAACATTAGAAGAGGAATTTTTAGCGTATATTAAAAAGATGGAAGCACTGGAAG
AAGCACTGGCATTAGTTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKAL
PWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGL
HKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADAR
QEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLY
REMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED

Sequences:

>Translated_382_residues
MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKAL
PWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGL
HKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADAR
QEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLY
REMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED
>Mature_382_residues
MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKAL
PWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGL
HKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADAR
QEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLY
REMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=344, Percent_Identity=33.1395348837209, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43039; Mature: 43039

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKI
CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHEEEHHHHEE
VVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNR
EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
VSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAA
HHHHHHHCCCEEECCCEEEEEEEEEECEEEEEEECCCCCCHHCCCEECCCCCCHHHHHHH
ALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADAR
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHH
QEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVV
HHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHECCCCCCCCCEEE
VANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYN
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHH
GYLRTDLYQYWGPRKPRPKKED
HHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKI
CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHEEEHHHHEE
VVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNR
EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
VSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAA
HHHHHHHCCCEEECCCEEEEEEEEEECEEEEEEECCCCCCHHCCCEECCCCCCHHHHHHH
ALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADAR
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHH
QEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVV
HHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHECCCCCCCCCEEE
VANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYN
ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHH
GYLRTDLYQYWGPRKPRPKKED
HHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]