Click here to switch to the map view.

The map label for this gene is 226224466

Identifier: 226224466

GI number: 226224466

Start: 1923021

End: 1923860

Strand: Reverse

Name: 226224466

Synonym: Lm4b_01879

Alternate gene names: NA

Gene position: 1923860-1923021 (Counterclockwise)

Preceding gene: 226224471

Following gene: 226224465

Centisome position: 66.05

GC content: 36.79

Gene sequence:

>840_bases
ATGAGAAAAATAAAAATTATCACAGATTCAACTGCTGGACTAACATTAGAAGAAGCAGCAAAATGGAATATTGATGTTTT
ATATTTAACCGTAGAAATTGATGGGCAAATATACAACCCTAAAACAGACATTACACCAGAAGAATTTATGGTACGAATGG
CAGAAACAAAAGAATTACCAAAATCTTCTCAACCTGCGATTGGTTCTTTTGTGGAAGCATACGAAAAATATACGGCTGAA
GGCTATGAAATTCTTTCTATCCACTTAACTGAAAAACTAAGTGGTACTGTCAATGCGGCTCGCCAAGCAGCTGATATGGT
AGAAGGAAATATTACGGTTGTAGACTGCGATTATACAGCTCGTGGGCAAGCATTCCAAGTACTAAAAGCTGCTGAAATGG
CTCAGTCGGGCGATTATTCTGTAGAGGAAATTCACGCAAAAATTAATGATATTCGTGACAAAACAAAACTTTATATCGTT
GTCGTAACACTCGATAATTTAATTAAAGGTGGACGTGTTGGACGGATGCAAGGCTTCTTCGGTAGTCTTTTAAATATCAA
ATTAATTGCCAAATTAACTGACGGACAATTGGAAGAAGAAACGAAAGTCCGCAGCAACAAAAAAGTATTACAATATTGCC
TAAACCTAATTAAAGATGAACCGAAAAAAATTCAGCATCTAGACGTTGTTCATGCGGATGGGCTTAATCTGGCGGATGAT
TTCATCGCTGAATCAAAAGAAATAACCGGTTTAACAGAAATTCCACTATTTTTTGCAGACCCAGTTATCTCCACACATGC
TGGAACTGGTGCGTTTGCATTTATGTACTATACTGACTAA

Upstream 100 bases:

>100_bases
AATACCATTTCTTTCTCTTTTCTTAAAACTAGTTTATAGGTTGTGTATACTGCCGGGGATGTTATAATAAGATAAAATAA
GCAAAACTGGATGTGGCTAT

Downstream 100 bases:

>100_bases
GTGAGTGATTGCATATGACAAAGAAAAAATGGCTGTGGCTTACAGGGAGCGTGCTTGTTATCGCACTTCTTGTTGGCGCA
GTTTTTGGTATCAAGTATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVEIDGQIYNPKTDITPEEFMVRMAETKELPKSSQPAIGSFVEAYEKYTAE
GYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDCDYTARGQAFQVLKAAEMAQSGDYSVEEIHAKINDIRDKTKLYIV
VVTLDNLIKGGRVGRMQGFFGSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLIKDEPKKIQHLDVVHADGLNLADD
FIAESKEITGLTEIPLFFADPVISTHAGTGAFAFMYYTD

Sequences:

>Translated_279_residues
MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVEIDGQIYNPKTDITPEEFMVRMAETKELPKSSQPAIGSFVEAYEKYTAE
GYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDCDYTARGQAFQVLKAAEMAQSGDYSVEEIHAKINDIRDKTKLYIV
VVTLDNLIKGGRVGRMQGFFGSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLIKDEPKKIQHLDVVHADGLNLADD
FIAESKEITGLTEIPLFFADPVISTHAGTGAFAFMYYTD
>Mature_279_residues
MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVEIDGQIYNPKTDITPEEFMVRMAETKELPKSSQPAIGSFVEAYEKYTAE
GYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDCDYTARGQAFQVLKAAEMAQSGDYSVEEIHAKINDIRDKTKLYIV
VVTLDNLIKGGRVGRMQGFFGSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLIKDEPKKIQHLDVVHADGLNLADD
FIAESKEITGLTEIPLFFADPVISTHAGTGAFAFMYYTD

Specific function: Unknown

COG id: COG1307

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DegV domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003797 [H]

Pfam domain/function: PF02645 DegV [H]

EC number: NA

Molecular weight: Translated: 31010; Mature: 31010

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVEIDGQIYNPKTDITPEEFMVRMAETKELP
CCEEEEEECCCCCCCHHHHCCCCEEEEEEEEEECCEEECCCCCCCHHHHHHHHHHHHCCC
KSSQPAIGSFVEAYEKYTAEGYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDCDYTA
CCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHCHHHHHHHHHHHHHCCCEEEEECCCCC
RGQAFQVLKAAEMAQSGDYSVEEIHAKINDIRDKTKLYIVVVTLDNLIKGGRVGRMQGFF
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECHHHCCCCCCHHHHHH
GSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLIKDEPKKIQHLDVVHADGLNLADD
HHHHEEEEEEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHEEEEEECCCCCCHHH
FIAESKEITGLTEIPLFFADPVISTHAGTGAFAFMYYTD
HHHCCHHCCCCCCCCCEECCCHHCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVEIDGQIYNPKTDITPEEFMVRMAETKELP
CCEEEEEECCCCCCCHHHHCCCCEEEEEEEEEECCEEECCCCCCCHHHHHHHHHHHHCCC
KSSQPAIGSFVEAYEKYTAEGYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDCDYTA
CCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHCHHHHHHHHHHHHHCCCEEEEECCCCC
RGQAFQVLKAAEMAQSGDYSVEEIHAKINDIRDKTKLYIVVVTLDNLIKGGRVGRMQGFF
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECHHHCCCCCCHHHHHH
GSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLIKDEPKKIQHLDVVHADGLNLADD
HHHHEEEEEEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHEEEEEECCCCCCHHH
FIAESKEITGLTEIPLFFADPVISTHAGTGAFAFMYYTD
HHHCCHHCCCCCCCCCEECCCHHCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]