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The map label for this gene is ybdH [H]

Identifier: 226224340

GI number: 226224340

Start: 1792875

End: 1793981

Strand: Reverse

Name: ybdH [H]

Synonym: Lm4b_01751

Alternate gene names: 226224340

Gene position: 1793981-1792875 (Counterclockwise)

Preceding gene: 226224341

Following gene: 226224339

Centisome position: 61.59

GC content: 41.37

Gene sequence:

>1107_bases
TTGTTGAATAAAGAATTGATTGTTCGCGGAGCTCCGCAAGAATATTTATGCCAAGTAGGCGCGTGGGATACATTACCTAC
TCACCTAGAACGCCGCGGTTTGAAAAATGTATTAGTAGTTCGTGGAAATGCTTCTTGGGAAGTCGCTAAAAAGAAATTCC
CTGTTTTATCAACTGTTACATCTACTTTTGAAGTATATAATGGTGGTTCTACCTACGAGGAGCGCGATCGTCTGGTGGCA
ATCATGGAAACAAATAAGATGGATGCGATTATCGCAGTAGGTGGCGGAAAAATAGCTGACGTATGTAAAGCGACAGCAGC
AGTTCTACGTTTACCAGTCATTATCTTACCGACACTTGCATCAACTTGTGCCGCTTATACGCCACTTAGTGTGATGTACG
ACGAAGAGGGCGCTATGATTCGTTACGATGTGTTTGCGAGTAGTAATGCGCTGTTATTAATTGATCCGGAAATGATTTTA
GACTCACCGAAAGAGTTACTAGTTGCTGGAATTGGCGATACGCTAGCCAAATGGTACGAGGCAGACGTGATTATTAATTC
CTTATCAACTAAATCAGTCGAAATTGAAATCGCGCATTTTGCTGCCAAAATGTGCCGTGATAACTTGTTGCAATATAGCG
AAGAAGCACTTGCTGCCATGGACAAACAAGTATTGAATGAAGCGTTTGTTAAAATTATTGAGACGAATATTTTAGTTGGT
GGAATGGTCGGTGGTTTTGGCGATGATTATGGACGTTGTGCAGGAGCGCATTCGATTCATGACGCGCTAACGATGGTTCC
AGAAACACATCACTTATTGCATGGTAATAAAGTAGCTTATGGTATTTTAGTTCAATTAGTAATAGAAAATAGATGGGATG
AAATCGAGCGTTTGTTGCCATTTTATTCTGAGCTTGGTCTTCCGATGAGTTTATATGATATGGGACTTGCGACACTTGCG
GAAGAAACGCTTGTGGCCGTATCTAAACGTGCAACGGAGCCACATGAAACAATCCATATGATGCCCGGTGAAATGACAGC
TGATGTAGTATTAAATGCGATGAAACAGTTAGAAGATAGTATGGCAATGAAACGAGTGGCTAAGTAA

Upstream 100 bases:

>100_bases
AAGCAATAGTGCGATTGACAGTAGGTTTAAGTTCCTATACAATTTGAATTATAAATGTCGCAGCCGAATATCCGACCGTG
CCAGACAGAAGGGATGATTT

Downstream 100 bases:

>100_bases
AAATGATTATTCGGAAAGAACAACCACAAGATTACGAGGCCATTCGTCGTGTGAATGAGGAAGCTTTTAAGGGTACTGTG
GAAGCAGACTTGATTGAAAG

Product: glycerol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNASWEVAKKKFPVLSTVTSTFEVYNGGSTYEERDRLVA
IMETNKMDAIIAVGGGKIADVCKATAAVLRLPVIILPTLASTCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMIL
DSPKELLVAGIGDTLAKWYEADVIINSLSTKSVEIEIAHFAAKMCRDNLLQYSEEALAAMDKQVLNEAFVKIIETNILVG
GMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGNKVAYGILVQLVIENRWDEIERLLPFYSELGLPMSLYDMGLATLA
EETLVAVSKRATEPHETIHMMPGEMTADVVLNAMKQLEDSMAMKRVAK

Sequences:

>Translated_368_residues
MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNASWEVAKKKFPVLSTVTSTFEVYNGGSTYEERDRLVA
IMETNKMDAIIAVGGGKIADVCKATAAVLRLPVIILPTLASTCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMIL
DSPKELLVAGIGDTLAKWYEADVIINSLSTKSVEIEIAHFAAKMCRDNLLQYSEEALAAMDKQVLNEAFVKIIETNILVG
GMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGNKVAYGILVQLVIENRWDEIERLLPFYSELGLPMSLYDMGLATLA
EETLVAVSKRATEPHETIHMMPGEMTADVVLNAMKQLEDSMAMKRVAK
>Mature_368_residues
MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNASWEVAKKKFPVLSTVTSTFEVYNGGSTYEERDRLVA
IMETNKMDAIIAVGGGKIADVCKATAAVLRLPVIILPTLASTCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMIL
DSPKELLVAGIGDTLAKWYEADVIINSLSTKSVEIEIAHFAAKMCRDNLLQYSEEALAAMDKQVLNEAFVKIIETNILVG
GMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGNKVAYGILVQLVIENRWDEIERLLPFYSELGLPMSLYDMGLATLA
EETLVAVSKRATEPHETIHMMPGEMTADVVLNAMKQLEDSMAMKRVAK

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=351, Percent_Identity=35.042735042735, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI87082352, Length=325, Percent_Identity=35.6923076923077, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 40419; Mature: 40419

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNASWEVAKKKFPVLSTVT
CCCCCEEEECCCHHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHCCCHHHHHH
STFEVYNGGSTYEERDRLVAIMETNKMDAIIAVGGGKIADVCKATAAVLRLPVIILPTLA
HHHHEECCCCCHHHHCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
STCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMILDSPKELLVAGIGDTLAKWYE
HHHHHCCCEEEEECCCCCEEEEEEEECCCEEEEECHHHHHCCCHHHEEECCCHHHHHHHH
ADVIINSLSTKSVEIEIAHFAAKMCRDNLLQYSEEALAAMDKQVLNEAFVKIIETNILVG
HHHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGNKVAYGILVQLVIENRWDEIERLLP
CCCCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
FYSELGLPMSLYDMGLATLAEETLVAVSKRATEPHETIHMMPGEMTADVVLNAMKQLEDS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHHHHHH
MAMKRVAK
HHHHHHCC
>Mature Secondary Structure
MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNASWEVAKKKFPVLSTVT
CCCCCEEEECCCHHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHCCCHHHHHH
STFEVYNGGSTYEERDRLVAIMETNKMDAIIAVGGGKIADVCKATAAVLRLPVIILPTLA
HHHHEECCCCCHHHHCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
STCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMILDSPKELLVAGIGDTLAKWYE
HHHHHCCCEEEEECCCCCEEEEEEEECCCEEEEECHHHHHCCCHHHEEECCCHHHHHHHH
ADVIINSLSTKSVEIEIAHFAAKMCRDNLLQYSEEALAAMDKQVLNEAFVKIIETNILVG
HHHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
GMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGNKVAYGILVQLVIENRWDEIERLLP
CCCCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
FYSELGLPMSLYDMGLATLAEETLVAVSKRATEPHETIHMMPGEMTADVVLNAMKQLEDS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHHHHHH
MAMKRVAK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]