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The map label for this gene is ygjR [H]

Identifier: 226224329

GI number: 226224329

Start: 1774197

End: 1775180

Strand: Reverse

Name: ygjR [H]

Synonym: Lm4b_01740

Alternate gene names: 226224329

Gene position: 1775180-1774197 (Counterclockwise)

Preceding gene: 226224330

Following gene: 226224328

Centisome position: 60.95

GC content: 38.72

Gene sequence:

>984_bases
ATGAAACTTGGAATTATGGGAACGAACTGGATTACGGATTCTTTTATTGAAGGTGCTATTAATTCAGGTGAATGGAATCT
TACTGCGGTATATTCGCGCACAGAAGAAAAAGCACGCGCATTTGGAGAAAAATATGGGGACTTGACTTATTTCACGGATA
TAGAAGAAATGGGCAAATCAGATGCACTTGATGCGGTCTACATTGCTTCTCCTAATGCGCTCCATTATCAACATGCGGTT
AGCTTACTGAAAAATAAAAAACATGTTATCGTAGAAAAACCGATTTTTTCTACCGTAGCCGAATTAGAGCATGCGCATCA
AATTGCTCGCGAAAACAATGTCTTTTTATTTGAAGCAGCGCGCCACATTCAAGAGCCAAACTTCAAACGCCTACAAGAAA
ACATCGAAAAAGTAGGTACTATTCACGGTGCAACACTAGCGTATATGAAGTATTCTTCCAGATACGATCAAGTTTTAAAC
GGTGAAGAACCAAACATCTTCTCCTTGAAATTTTCTGGCGGATCCATCGTTGACTTAGGTGTCTATCCATTATATTCAGC
GATTACACTATTCGGTGAACCCATAAAAGCAACTTATTTTGCCACTAAATTACCAACTGGTGTAGACGGACTTGGACCAA
TAATTCTCGAATACCCAACATTCAATATTACTATCATTCAAGGGAAAAACTCACAGTCCTTCCTGCCAAGCGAAATTTAT
GGTCAAAAAGGAACACTAATTGTCGATCCACTTACTGGAATTGAAAAGATTACTTTTTACGACAACGCAACAAAAGAAGA
AACAGAGCTTGCTGGTCCAGTTGTAGCCAATGATATGCAATTTGAAGCAGCAGAGTTTGCTAGAATTATCGAACAAAGCG
ACCGAGATACATATGAATACTTAGCAGACCTAAGCTTGAAAGTATTACGTGTCTCCAACGAACTTCGTCACCAAAATGAC
ATTTGGTTTGACGCAGAAAAATAA

Upstream 100 bases:

>100_bases
ATACTACTAGAATCAGTGGGCCATCTGTTTCAAACAATTAGTACGCTTTTTTCCTTATTTTAAGGTATACTTAAGATAAA
ATGAAGGGAGCTGTTGGCTA

Downstream 100 bases:

>100_bases
TTTTGAAGAGCTAGGAAAAGGCTACCATGCTGATTCCTAGTTTTTTTGTGCTTGACAATAAATGAAATCCAAGTGTACTA
TTTACTTAATACACTAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEKYGDLTYFTDIEEMGKSDALDAVYIASPNALHYQHAV
SLLKNKKHVIVEKPIFSTVAELEHAHQIARENNVFLFEAARHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLN
GEEPNIFSLKFSGGSIVDLGVYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEYPTFNITIIQGKNSQSFLPSEIY
GQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVANDMQFEAAEFARIIEQSDRDTYEYLADLSLKVLRVSNELRHQND
IWFDAEK

Sequences:

>Translated_327_residues
MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEKYGDLTYFTDIEEMGKSDALDAVYIASPNALHYQHAV
SLLKNKKHVIVEKPIFSTVAELEHAHQIARENNVFLFEAARHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLN
GEEPNIFSLKFSGGSIVDLGVYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEYPTFNITIIQGKNSQSFLPSEIY
GQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVANDMQFEAAEFARIIEQSDRDTYEYLADLSLKVLRVSNELRHQND
IWFDAEK
>Mature_327_residues
MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEKYGDLTYFTDIEEMGKSDALDAVYIASPNALHYQHAV
SLLKNKKHVIVEKPIFSTVAELEHAHQIARENNVFLFEAARHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLN
GEEPNIFSLKFSGGSIVDLGVYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEYPTFNITIIQGKNSQSFLPSEIY
GQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVANDMQFEAAEFARIIEQSDRDTYEYLADLSLKVLRVSNELRHQND
IWFDAEK

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=293, Percent_Identity=23.5494880546075, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI145693182, Length=331, Percent_Identity=40.785498489426, Blast_Score=252, Evalue=2e-68,
Organism=Drosophila melanogaster, GI24581117, Length=300, Percent_Identity=25, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36772; Mature: 36772

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEKYGDLTYFTDIEEMGKS
CEEECCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEECHHHCCCC
DALDAVYIASPNALHYQHAVSLLKNKKHVIVEKPIFSTVAELEHAHQIARENNVFLFEAA
CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEEH
RHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLNGEEPNIFSLKFSGGSIVDLG
HHCCCCCHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEC
VYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEYPTFNITIIQGKNSQSFLPSEIY
HHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCHHHC
GQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVANDMQFEAAEFARIIEQSDRDTYEY
CCCCCEEECCCCCCEEEEEECCCCCCHHHHCCCEEECCCCHHHHHHHHHHHHCCCHHHHH
LADLSLKVLRVSNELRHQNDIWFDAEK
HHHHHHHEEHHHHHHCCCCCCEEECCC
>Mature Secondary Structure
MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEKYGDLTYFTDIEEMGKS
CEEECCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEECHHHCCCC
DALDAVYIASPNALHYQHAVSLLKNKKHVIVEKPIFSTVAELEHAHQIARENNVFLFEAA
CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEEH
RHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLNGEEPNIFSLKFSGGSIVDLG
HHCCCCCHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEC
VYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEYPTFNITIIQGKNSQSFLPSEIY
HHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCHHHC
GQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVANDMQFEAAEFARIIEQSDRDTYEY
CCCCCEEECCCCCCEEEEEECCCCCCHHHHCCCEEECCCCHHHHHHHHHHHHCCCHHHHH
LADLSLKVLRVSNELRHQNDIWFDAEK
HHHHHHHEEHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]