Definition | Listeria monocytogenes Clip81459, complete genome. |
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Accession | NC_012488 |
Length | 2,912,690 |
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The map label for this gene is 226223747
Identifier: 226223747
GI number: 226223747
Start: 1159463
End: 1160206
Strand: Direct
Name: 226223747
Synonym: Lm4b_01151
Alternate gene names: NA
Gene position: 1159463-1160206 (Clockwise)
Preceding gene: 226223746
Following gene: 226223748
Centisome position: 39.81
GC content: 43.41
Gene sequence:
>744_bases ATGCCTCAAGTGAGGGATTTATCTGTAATTGATGTGCCTGGTGGCTGTGTTTTGACGAGCTGTGATATTAGCGCTGGGTT TGGTGAGAAAGTGCATGATGGTTTAAGAGTCGCGCCGGAAGTCACAGCTCGTTTGACCTTGAGAGTCGCTCTACTAGAAA TGCTTGCTTCAGGTGCTGTAGTAGTGGCTGTGAGTGATGTTATCGGAGCGGAAATGGAGCCGACCGGTAAACGTGTTATC GCAGGGCTAAAAGACGAACTTATTAAGGCTGATTTAGGTCATATTGAATTAAATGGAAGTACTGAAGAAAATATGAACGT AACACAAACTAGTGTAGGCGTTCTTGTAACTGGTTTTGCGACTAAAGCTGCACTTAAGCTTATAAATGTGCACGAAGCTG CGGTCTTATTTGCATTTGGCGAACCGATTGTTGGAGCAGAAGTTTTGCAGAGGATGGCGGAGATGCCAGATTATCATTTA GTGAAAAAATTGGTGGAGCATAGCGATGTGCTTGAAGTTGTGCCGGTTGGGTCGAAAGGAATGGCTTATGAGGCAAATAC TTTAGCACGGCTTAATGATTGTACTTTCAAAGCCAGTGACGTTTTTAATGAAGCGACCATGAATAAAACTGCGGGGCCTG CTTCTGTTATTTTAGTAGCAGTTAAAGCAAGTGAAGTAAAAGCATTTGAGCAGAACTTTCCAGCGGCTAAATGTTTAGGA GAGTTGAGGAATTACCATGAGTGA
Upstream 100 bases:
>100_bases CGCGAAGCATATTTTTTATATTTCTTCGGTAGAGGAAACTGGAATAGAAGAGCTTCGGGCATATTTGGAAGATTAATTTT AACTAAGTGGGGGTTATTTT
Downstream 100 bases:
>100_bases GATGATGCTTGTAACTGGTGGCGCTAGAAGTGGTAAAAGTAGTTTTGCTGAAAAAGAAGCTACCAAATATAATCGTGTTT TATATGTGGCGACCGGAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MPQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTARLTLRVALLEMLASGAVVVAVSDVIGAEMEPTGKRVI AGLKDELIKADLGHIELNGSTEENMNVTQTSVGVLVTGFATKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHL VKKLVEHSDVLEVVPVGSKGMAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVILVAVKASEVKAFEQNFPAAKCLG ELRNYHE
Sequences:
>Translated_247_residues MPQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTARLTLRVALLEMLASGAVVVAVSDVIGAEMEPTGKRVI AGLKDELIKADLGHIELNGSTEENMNVTQTSVGVLVTGFATKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHL VKKLVEHSDVLEVVPVGSKGMAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVILVAVKASEVKAFEQNFPAAKCLG ELRNYHE >Mature_246_residues PQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTARLTLRVALLEMLASGAVVVAVSDVIGAEMEPTGKRVIA GLKDELIKADLGHIELNGSTEENMNVTQTSVGVLVTGFATKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHLV KKLVEHSDVLEVVPVGSKGMAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVILVAVKASEVKAFEQNFPAAKCLGE LRNYHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26214; Mature: 26082
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTARLTLRVALLEMLASGAV CCCCCCCEEEECCCCEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEE VVAVSDVIGAEMEPTGKRVIAGLKDELIKADLGHIELNGSTEENMNVTQTSVGVLVTGFA EEEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHCEEEECHH TKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHLVKKLVEHSDVLEVVPVGSKG HHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCC MAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVILVAVKASEVKAFEQNFPAAKCLG CEEECCHHHHHCCCEEEHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHCCCHHHHHH ELRNYHE HHHHCCC >Mature Secondary Structure PQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTARLTLRVALLEMLASGAV CCCCCCEEEECCCCEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEE VVAVSDVIGAEMEPTGKRVIAGLKDELIKADLGHIELNGSTEENMNVTQTSVGVLVTGFA EEEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHCEEEECHH TKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHLVKKLVEHSDVLEVVPVGSKG HHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCC MAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVILVAVKASEVKAFEQNFPAAKCLG CEEECCHHHHHCCCEEEHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHCCCHHHHHH ELRNYHE HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA