Click here to switch to the map view.

The map label for this gene is rob [C]

Identifier: 226223716

GI number: 226223716

Start: 1133262

End: 1134035

Strand: Direct

Name: rob [C]

Synonym: Lm4b_01118

Alternate gene names: 226223716

Gene position: 1133262-1134035 (Clockwise)

Preceding gene: 226223715

Following gene: 226223717

Centisome position: 38.91

GC content: 31.65

Gene sequence:

>774_bases
ATGAAAACGAAGATGCCTGAAATGCTTTCTTTCATTTCAGAAGAAGCTGTTAGTAGAAAAATGACAAGTGAGGAAATTGC
TGCTCATTTTGGTTATGATAAACATCACTTTAGTCGAAAATTTAAAGAAATTAATGGATTCAGTGTGGTTGAATTCCTTT
CTAGTTTAAAAGTGGAAAAGGCGATTATTGAACTTAATGAAGAAAAGCGTATTCTCGACCTACAAGAACATTCAGGTTTT
GAAAGTAGTGGTAGTTTCACGAATACTTTTAAAAAATATACAGGTAGTTCTCCTAGAAAATACAAAACGGAAATGAATGA
TATTTTTTATGATATGAAACGTTTTGAAAATGATAATAAGGATAAGTCGATAGCGCATTTTCAAGAAAAGAATGATTCTT
TTTGTACGGTAACTATTGATGTACCTGATGAATTTGAGAAGGGTATCATATTTATTGGACTTTTCCGTACTCTTATACCG
AATCATATGCCTATATCGGGATTAGCTACTAAAAATTTAATAGGAAATCAATTGAAAAATATTCCAAGTGGAGACTATTA
TTTATTAGCTTGTGCGATAAGCCAGTCTAATAACATTCTATCTTATTTTAACTTAAGTAATAGTTTGAGAGGGAAAGAAG
ATGAAAAGCTATCTTTTCCTAAATGTTCTGGCAAGCATTACGCGATTAAGCTGAGAGAACCAATACCAGAAGATCCGCCA
ATATTAGCTAATGTGGGAAAAATTTTAATCTCCTGTTTGAAGAACACAATCTAG

Upstream 100 bases:

>100_bases
TTTGTTCTTTTTGAGGGCTTACATTTTAATACTAATTTGTAATATAATTTATTTATTAATATGATTTTTAGAAAAACTGC
TCTAAAAAGGAGGGGGAACG

Downstream 100 bases:

>100_bases
AACAATATTGTTTGACTATGAAATGTTAAAATAATTGCAGGCTAATGAAAAGGAGAGATAAGATATGGCTTTAAATGCAA
AGAGTATCACTATAGGACTA

Product: regulatory protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEINGFSVVEFLSSLKVEKAIIELNEEKRILDLQEHSGF
ESSGSFTNTFKKYTGSSPRKYKTEMNDIFYDMKRFENDNKDKSIAHFQEKNDSFCTVTIDVPDEFEKGIIFIGLFRTLIP
NHMPISGLATKNLIGNQLKNIPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLSFPKCSGKHYAIKLREPIPEDPP
ILANVGKILISCLKNTI

Sequences:

>Translated_257_residues
MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEINGFSVVEFLSSLKVEKAIIELNEEKRILDLQEHSGF
ESSGSFTNTFKKYTGSSPRKYKTEMNDIFYDMKRFENDNKDKSIAHFQEKNDSFCTVTIDVPDEFEKGIIFIGLFRTLIP
NHMPISGLATKNLIGNQLKNIPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLSFPKCSGKHYAIKLREPIPEDPP
ILANVGKILISCLKNTI
>Mature_257_residues
MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEINGFSVVEFLSSLKVEKAIIELNEEKRILDLQEHSGF
ESSGSFTNTFKKYTGSSPRKYKTEMNDIFYDMKRFENDNKDKSIAHFQEKNDSFCTVTIDVPDEFEKGIIFIGLFRTLIP
NHMPISGLATKNLIGNQLKNIPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLSFPKCSGKHYAIKLREPIPEDPP
ILANVGKILISCLKNTI

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29331; Mature: 29331

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEINGFSVVEFLSSLKVEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AIIELNEEKRILDLQEHSGFESSGSFTNTFKKYTGSSPRKYKTEMNDIFYDMKRFENDNK
HHHHCCCCCCEEEHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
DKSIAHFQEKNDSFCTVTIDVPDEFEKGIIFIGLFRTLIPNHMPISGLATKNLIGNQLKN
CCHHHHHHHCCCCEEEEEEECCCCHHCCEEHEEHHHHHCCCCCCCCCHHHHHHHHHHHHC
IPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLSFPKCSGKHYAIKLREPIPEDPP
CCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
ILANVGKILISCLKNTI
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEINGFSVVEFLSSLKVEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AIIELNEEKRILDLQEHSGFESSGSFTNTFKKYTGSSPRKYKTEMNDIFYDMKRFENDNK
HHHHCCCCCCEEEHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
DKSIAHFQEKNDSFCTVTIDVPDEFEKGIIFIGLFRTLIPNHMPISGLATKNLIGNQLKN
CCHHHHHHHCCCCEEEEEEECCCCHHCCEEHEEHHHHHCCCCCCCCCHHHHHHHHHHHHC
IPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLSFPKCSGKHYAIKLREPIPEDPP
CCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
ILANVGKILISCLKNTI
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA